BAC Information

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BAC

Clone NameMSMg01-069D24
Chromosome5 (Build37)
Map Location 5,484,916 - 5,485,047
singlet/doubletsinglet
Overlap genenone
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik
Downstream geneCldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D24.T7 (MSMg01no069_d24.b1)MSMg01-069D24.TJ (MSMg01no069_d24.g1)
ACCAG293551AG293552
length777779
length of high quality
(start - end)
288 (124 - 411)138 (128 - 265)
definitionCHROMAT_FILE: MSMg01no069_d24.b1 PHD_FILE: MSMg01no069_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:57 2005CHROMAT_FILE: MSMg01no069_d24.g1 PHD_FILE: MSMg01no069_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCCCCCCCCTCTTTTCCCCCTCCCCTCTTTTTCCTTTATGACATNT
CATCTATAATTGCGGCGCTAAACGACTCATATTTTCGAGAACCGCGGAAT
TACTGGTCTTTCCCCGATAACCATCACCTTGAAGCAGCTGGTCTGATAGA
AAAAGGGAATGGCCTTTTAAACACACAGTTACAGTGTCAATTAGGTGGTA
GCAGCATGGAGGGCTGGGGCAGAGTTCTTCAGAAGGCAGTATATGCTTTG
AATCAGCGTTCAATATATGGTACAGTTTCCCCCATAGCCAGGATCTATGG
GTCCAGGAATCAAGGGGTGGAGAAGGGAATAGTTCCACTCAGTATCACTC
CTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCACAATTCTAGGT
TCTGCTGGCCTATATATTTTGCCTCCACAGCATGGGTTGCTCCTACCACG
AGCTACAACATATATTCCATTGAACTGGAAGCTCATACTTCCCCCTGGTC
ATTTTGGGCTTCTAATGCCCTTATCCCAACTTACTAATATAGGAATGACC
GTGTTACGAGGGGTGATAGATCCACATTACCATGGGGAAATTGGGTTGCC
TCTCCACATTGTAGGTAAACAGGATTTGTCTTGTTGTTTTGCTGATCCCC
TATGCCGCCCTCTTAATACTACCATATCCCCGTCGCTTTATGTCTACGTT
TCAACTTTTACAGCCTTTTTCTATTTTTAATGTACTTCTGACTTCACTCT
TTCTTTATTGCATGTAAGCCTTCAACC
TTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTTCTCCTTTTTTTCTACTT
CCNCTCGATGATATGNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTTGTAACAAGGAGCAAA
CCTCACTGTTCAAGTACAGAAGAGACCCCGGTAGTCTTTAGCCCAAGAGT
ATTGGTGACAATTTTGGGTATTAAATGAGAGTGACTGTAAAGTCACTGTT
CCCACCACTTACCAAAAACAGGACGTGAGTCAGATTTTTACAAAGTGTAT
TGCTTGATCCTTTTTTTCACTTCATAGAGCTGAGGTCAGCTCCGAGAGTT
CAATCCTGCTCAGTACCTGCCGGGAGTTACTGCCATTCCTTTAAGGAGTG
ATTTTTAACTAGCCTTGCATGTTTTAAGCTCCCTGACGGATTTTTATTTT
TAAGGAATGAATTATACACATCCATTATCCTACATCTTCTGTTTAAAACC
TTATCTGTGTGAACCCAACACCTGCATGTTAATGTGTGTATTTAACAAGG
TGAGAGAGCTCAGGATTTACTAAATTCGAGATAGTTGACTTCTTTCCACG
GTTAGGACTATTCTATTCAATGGGAGACTGATCTCTGGTTACGTTCGCGT
TAGATTACCCTTTATAACCACCTATTTTACTTGATATGCAACAGATACCT
TTCCCTTGTGGATGTTATTTTTCCCATTACATTTGGACTACACTCGGAAA
TTTTTTACTGAGTTTTGCATCACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d24.g1 MSMg01no069_d24.g1 CHROMAT_FILE:
MSMg01no069_d24.g1 PHD_FILE: MSMg01no069_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:57 2005
         (138 letters)



>mm_chr5_5484716_5485251
          Length = 536

 Score =  232 bits (120), Expect = 6e-66
 Identities = 130/134 (97%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcttgtaacaaggagcaaacctcactgttcaagtacagaagagaccccggtagtct 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 332 tctctcttgtaacaaggagcaaacctcactgttcaagtacagaggagaccccagtagtct 273

                                                                       
Query: 61  ttagcccaagagtattggtgacaattttgggtattaaatgagagtgactgtaaagtcact 120
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 272 ttagcccaagagtattggtgacaattttgggtattaaat--gagtgactgtaaagtcact 215

                         
Query: 121 gttcccaccactta 134
           ||||||||||||||
Sbjct: 214 gttcccaccactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 536
Length adjustment: 8
Effective length of query: 130
Effective length of database: 528
Effective search space:    68640
Effective search space used:    68640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)