BAC Information

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BAC

Clone NameMSMg01-069G21
Chromosome5 (Build37)
Map Location 97,192,823 - 97,193,013
singlet/doubletsinglet
Overlap geneFras1
Upstream geneLOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069G21.T7 (MSMg01no069_g21.b1)MSMg01-069G21.TJ (MSMg01no069_g21.g1)
ACCAG293689AG293690
length688711
length of high quality
(start - end)
57 (241 - 297)191 (125 - 315)
definitionCHROMAT_FILE: MSMg01no069_g21.b1 PHD_FILE: MSMg01no069_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:11 2005CHROMAT_FILE: MSMg01no069_g21.g1 PHD_FILE: MSMg01no069_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGAGGGAGGGCCATTTTTTTTTATCNGACGGAANNCNNNGANGCTTTCC
NNCACNCAGGGGNCCCCANGACCGACNCNNGAGAGNCANCAGAGAACCTT
TTTCGCCCACAACACACCAGACNGNCCACNCNAAAANAACCNCGACGCAA
CCCCAAACCAACCTGCNCCAAGGGCAAGGAACAACCAAGCAGACGGNGAC
TCCACCAANACACCCCACCAAGCGGCNCCCCAAATTTTATCCATAGGGAT
CTTCGTTTCTCTAANTGTGTCCGTGTTTCTACTGCGCTTAAGACTGCAGT
TTTTTTCATATCCNGCCACAGGGCGAGGCCAAGGGAGCCCTTTTTTATTT
GCCCCCCCCACAACACTCAAGTATCCCTGTCTTCTGGAAGATGAAAACCC
ACTCATTAAAAAAAAAAAAAAACTCCCACTGGCTAGGCCCACCTATTGCT
CTTAAGTCATGATCCTGCTAAATCTGGACAACACTCTGCTTCATGACCAG
ACCCTCGGTGTGCCTTTCCCATCCATAGAAGAGCCCCCCTTATATCCTAC
GTGGACTGACTTAATTCCCAACACACCATTAACAGATAGAAACCTTCCTC
CCTAGCTATCTACTTGTCCCTCCTGCCCTCCTTACTTTTTTTTTTTTGGC
AATGCCCGACCTTTCCCTACTATCCTCCCTTCTACTAT
ATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAAAATTTCAGGTCAGTTTCTACCCTACT
AACCACTATGTCTCTCTCCACTTAAAAACAGCCATCTCTTGCGTCTCTCC
TCTCAAGTCCCCCGAACACCTTGCAGTCCACGATGACCGCCCTCATTCTG
CAGCAACCTTTCCCTCTGTCTCCGGTCCTCAGCCCTGGAAGCCTTTGTCC
CAGGCTGTCTGTAACTTATTTATCCTGGCTGCTATTTCTCATATGTTTAG
AGACTGCTTATCTCTTCTCTGTACTCTGAGGACAAGGGCCATTTCCTTCA
TTGCTTTTTTCTCTGCACCGCCCCCCCCATACAACTCTAAATACAATACG
AACTTATACTATACCCGCTTCAAAAAAAAAATAAGCACGCGGAGGTGTGC
TTATGGCCTCGTATCTGTCCTCATCGCACAAGCTTACATTTTCCCAATGT
TCTATTGGTACTGCCTCTTGGTCCCTTTAACGTCTGTCTGCATGCTCTAC
TATTTCCATGTAACCCCTGACTCGGCGACGTATCTCTTACGTTCCCCCGA
CCACTGCCTTCTTCCTTCGCTGTCCCTGTTTTGGTGGTTTTTCTACCATT
TCCTTGCTTTCTTATCGGCCTTTCATATACATTCGCCCTTTCCCCTGCTT
TCCCCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_g21.g1 MSMg01no069_g21.g1 CHROMAT_FILE:
MSMg01no069_g21.g1 PHD_FILE: MSMg01no069_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:11 2005
         (191 letters)



>mm_chr5_97192623_97193213
          Length = 591

 Score =  354 bits (183), Expect = e-102
 Identities = 189/191 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacagccatctcttgcgtctctcctctcaagtcccccgaacaccttgcagtccacgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 391 aaaacagccatctcttgcgtctctcctctcaagtcccccgaacaccttgcagtccacgct 332

                                                                       
Query: 61  gaccgccctcattctgcagcaacctttccctctgtctccggtcctcagccctggaagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaccgccctcattctgcagcaacctttccctctgtctccggtcctcagccctggaagcct 272

                                                                       
Query: 121 ttgtcccaggctgtctgtaacttatttatcctggctgctatttctcatatgtttagagac 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 271 ttgtcccaggctgtctgtaacttatttatcctggctgctatttctcgtatgtttagagac 212

                      
Query: 181 tgcttatctct 191
           |||||||||||
Sbjct: 211 tgcttatctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)