Query= MSMg01no069_o08.b1 MSMg01no069_o08.b1 CHROMAT_FILE:
MSMg01no069_o08.b1 PHD_FILE: MSMg01no069_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:46 2005
(288 letters)
>mm_chr5_53817514_53818201
Length = 688
Score = 491 bits (254), Expect = e-143
Identities = 278/286 (97%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 gttcttttagcccttctcctccctgaatgcagagagaggacaacttttcccttactaatg 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcctttagcccttctcctccctgaatgcagagagaggacaacttttcccttactaatg 260
Query: 61 gagccattcttcagacagaaagatacacagagaaagacacagagagggagagagttatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagccattcttcagacagaaagatacacagagaaagacacagagagggagagagttatct 320
Query: 121 catgagtttcagcatggggcacagggtatgggggtagcctgaaatgaatttgactttcat 180
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 321 catgagtttcagcatggggcacagggtgtgggagtagcctgaaatgaatttgactttcat 380
Query: 181 aatggagaaaactc-acaagtacaaatgcttatcatgtatcaagcatcatctagatgttc 239
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aatggagaaaactcga-aagtacaaatgcttatcatgtatcaagcatcaactagatgttc 439
Query: 240 caaacatctgatttttatgggttgcttgttatcataggttatatgc 285
||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 440 caaacatctgacttttatgggttgtttgttatcataggttatatgc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no069_o08.g1 MSMg01no069_o08.g1 CHROMAT_FILE:
MSMg01no069_o08.g1 PHD_FILE: MSMg01no069_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:46 2005
(153 letters)
>mm_chr5_53955387_53955939
Length = 553
Score = 281 bits (145), Expect = 2e-80
Identities = 151/153 (98%)
Strand = Plus / Minus
Query: 1 cataaacacaggatatccaacatgggctaaccacttgtccagaaaacaaaataagcagac 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 353 cataaacacaggatatccaacatgggctaaccacttgtccagaaaagaaaataagcagac 294
Query: 61 ggttgcccacagaacacagcttacattcgggcagcagagtccgccaagaatcgattgcat 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 293 ggttgcccacagaacacagcttacattcgggcagcagagtccgccaagaagcgattgcat 234
Query: 121 tgagtctctgtctgactgatactccaacctgga 153
|||||||||||||||||||||||||||||||||
Sbjct: 233 tgagtctctgtctgactgatactccaacctgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space: 79025
Effective search space used: 79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
