BAC Information

Click to search

BAC

Clone NameMSMg01-069O11
Chromosome5 (Build37)
Map Location 24,441,369 - 24,441,558
singlet/doubletsinglet
Overlap genePrkag2
Upstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O11.T7 (MSMg01no069_o11.b1)MSMg01-069O11.TJ (MSMg01no069_o11.g1)
ACCAG294052AG294053
length669692
length of high quality
(start - end)
39 (238 - 276)192 (119 - 310)
definitionCHROMAT_FILE: MSMg01no069_o11.b1 PHD_FILE: MSMg01no069_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:47 2005CHROMAT_FILE: MSMg01no069_o11.g1 PHD_FILE: MSMg01no069_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCAAACGACTCCTATTTCTTGACCCGCNCGGAANNCNNGCCTTTCNNNG
ACGCGAGACCNCCACCAGACNCCAGNCCGGGCGGCCCCAANCCCTTTTTN
ATGCCACAAAAAAGCCCCNCNCNCCAGCCNCGNGCNGCNGCACACCAAAG
ACACGACCCAACAAACCCAGCAGGGACCGGCGGACACCGGACCCCGCACC
ACACAAGAAGAACGCAGCCCCCACGAGGTTTACTCGGTGCTCTTTTTGAG
GACACTGTTCTCGGAGCGTGTCCAGACTGGCCACAGGCCGTCCTTCTCTC
CCTTTGGAGCCAGAGAGCCACGGGAGGAGCAGGCAGTTTTTTTTCCCCGC
CCCCCACCACCAGCTCTTGTAGGTTGAGGTAGGACAACGAGAATTCCAAG
CCAAAAAAAAAAAAAATACAGCAAGCACAGGACCCCACACCTCACTGTCT
CACCAAGGCACCTAACGCCAGGACAGGGTCTCCGAACACACCTGACCAAT
AAAACGCTCAACACTTAAGACTCCACACACACCTAAGAACAACCCACTCT
GTTATCACGATCCCCCCTAAACAAACCCCACCTGCCATCCCACACACAAC
CGAAGCCAGCCTGCAACAACCCCTTTTTTTTTTTCTTTTCCGTAAACCCC
AAAACACCACAAGCGGCGG
ATGCAGTGTGTAGCCTGGCGGCGCCTGGTCCACAATTTAGGTGACCTATA
GAATTTCCCAGAAATTCCTTCAGCTCAGGATCAGGCCTTTGCCTCACTCC
CAGCACTTATTAACCCCTTAACAGAAGCTGATGAGTTGTCGTTGGTACAA
CAGCGACACAAACCATAACACCAGCATTAATAGTGTTGCCTTAACGATGT
TGTGGAAATGAGCCATGGCGGTGATGGAAAAGTTTGGGACAAGCCTTCTC
TGCAGTCCCCTGAGCACTCGGGCATGCCTGGTTAATGAGTGGCCACCCAC
TCCCCTCTTCTTTTTTACAATAGACGGCCCTGTAACCCACATTTTCCTCT
TACATCATCTTGCCACCCCCCCCCCATATTGTCATGTGATATTCTCATGA
CTGTGCGTCCTCACTAAAAAAAAAATACATGAGAGAGAGAGAGTGTTGTG
TTTACTGTAAACGGTTTCACTTTGCTTTGATATATTTCTTCTTGATTATC
CTCTCTCCTTCCGATATCTCTTCTTCTGCTTATTTATCTTTGCAATTCTT
CCCGCAACTCGGAGCCTTTCTTCTTTCATCTCGCTCCTCCACACATTGTA
TATTCTCTCCCTTCTTTCCCGCCTTCCTCTTGCATACCCTTCCTTCTTTT
CCCTTTTCTTTCTTTTCTCCCTTTCCCTTCTTTCCCCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o11.g1 MSMg01no069_o11.g1 CHROMAT_FILE:
MSMg01no069_o11.g1 PHD_FILE: MSMg01no069_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:47 2005
         (192 letters)



>mm_chr5_24441169_24441760
          Length = 592

 Score =  360 bits (186), Expect = e-104
 Identities = 189/190 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacagaagctgatgagttgtcgttggtacaacagcgacacaaaccataacaccagcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taacagaagctgatgagttgtcgttggtacaacagcgacacaaaccataacaccagcatt 331

                                                                       
Query: 61  aatagtgttgccttaacgatgttgtggaaatgagccatggcggtgatggaaaagtttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aatagtgttgccttaacgatgttgtggaaatgagccatggcggtgatggaaaagtttggg 271

                                                                       
Query: 121 acaagccttctctgcagtcccctgagcactcgggcatgcctggttaatgagtggccaccc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 270 acaagccttctctgcagtcccctgagcaatcgggcatgcctggttaatgagtggccaccc 211

                     
Query: 181 actcccctct 190
           ||||||||||
Sbjct: 210 actcccctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)