BAC Information

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BAC

Clone NameMSMg01-070B09
Chromosome5 (Build37)
Map Location 15,112,673 - 15,113,101
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070B09.T7 (MSMg01no070_b09.b1)MSMg01-070B09.TJ (MSMg01no070_b09.g1)
ACCAG294191AG294192
length800682
length of high quality
(start - end)
95 (65 - 159)428 (71 - 498)
definitionCHROMAT_FILE: MSMg01no070_b09.b1 PHD_FILE: MSMg01no070_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:02 2005CHROMAT_FILE: MSMg01no070_b09.g1 PHD_FILE: MSMg01no070_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNNTTTTNNNNNNNNNNNNNNCCCCNNNNCCTTCCCTCTCTTTCGCT
TTCTATATTGCGGCGCTATACGACTCCTATTCAAGAGGATCCGCGGAATC
TTTGTTCCCTTTGAGCCCCATTTTTTATTGGGTTTATTTGATTTTCTGAA
GTCCACCTCTCTTGAGCTTCTTTTTATATTATCGTTTGGGAATATTAAGG
TCCCCCCCCTTAATTCCCTTGGTAAATTTCTATTATATTTTGTTTCATAT
TCTTAGGTTAAAAAGATATTCCTTTTTTCCCCCTAAATTTCTCCCTTGGG
TTGTGCTCTTTTTTTTTGGCCTCTATTTTGCCGCGCGTCTGGTTTCCTTT
GTCAAAAACCTTGGGATTTTCCATTAAGCTCCCCCTTTTGCTTATTCTTC
CATTTTTTTTTGGCAACAACCCTTCTGCTAGGGACCTGGGTCATAAGATT
TTTTCTTCCCCCCTTTTGGTTTCCTCCTTATTTTTTCTTTAAGAGTTTTT
TTTCTCCCCACTTCTATCTTACCTTCCCTTTAAACTTTTCCCCCCACTTT
TCTTCCGGGTTTTCTTTAATATACATTTCTCTCCCTCTTTGACCACTTTT
ATTCTTTATCTCGTCCCCTCTTTCTTTTCATTTTGCTTACGTATCCCTCT
TTTTATGCTCTTCTCTTTTACCCTTTTTCCATCTCCTTAACTTGACATAT
CCAACCTTTTCATTTTGGTACTCGTATACATGCATATATTCCATTTTATC
TATTTCTATTGCCCGATTTTTCTTTTTTTTCTCACTCCATGCTCATCGTN

NCGATGAAGTGNTAGGCTGGCGGCGCCTGGTCACAAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTTTTCAGGACAACTGGGTCTTTGTCAA
GTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGCATT
GAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGGTAGC
TGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGG
TCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTTGTTA
AGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCGGGTGGG
GTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCGTAACTC
CTTCCATGGCCATTTTGTTCCCTATTCTGATACTACTGCATATGCCAGCA
ATTTTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTATGGCTATGCCAG
TACCTGGCAAACAGAAGTGGATGCTCACAGTCATTTATAGGATGGAGCAC
AGGGCCTCCAATGGAGAAGCTAGATAAAGCACCCATGGAGCTGAAGGGAT
CTGCAACCCTATATGCGGATAAAGAATATGAACTAATCAGTATCCCCCAG
AGCTTGTGTCTCTAGCCGCCTTAGCACCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_b09.g1 MSMg01no070_b09.g1 CHROMAT_FILE:
MSMg01no070_b09.g1 PHD_FILE: MSMg01no070_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:02 2005
         (428 letters)



>mm_chr5_15112473_15113301
          Length = 829

 Score =  739 bits (382), Expect = 0.0
 Identities = 418/430 (97%), Gaps = 3/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttttcagg-acaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 59
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 260

                                                                       
Query: 60  aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 320

                                                                       
Query: 120 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 380

                                                                       
Query: 180 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 440

                                                                       
Query: 240 aggagcttggtggctgattatgggatggatccccgggtggggtagtctctggatggtcca 299
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 441 aggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtcca 500

                                                                       
Query: 300 tcctttcgtcttagctttgtctccgtaactccttccatggccattttgttccctattctg 359
           ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 501 tcctttcttcttagctttgtctccgtaactccttccatggcttttttgttccctattctg 560

                                                                       
Query: 360 atactactgcatatgccagcaattttttgctgaaaggaccttgatatagctgtcttgt-a 418
           | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |
Sbjct: 561 acactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgtga 620

                     
Query: 419 tggctatgcc 428
            |||||||||
Sbjct: 621 -ggctatgcc 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space:   343580
Effective search space used:   343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)