BAC Information

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BAC

Clone NameMSMg01-070C01
Chromosome5 (Build37)
Map Location 145,632,859 - 145,633,204
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap
Downstream geneSmurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070C01.T7 (MSMg01no070_c01.b1)MSMg01-070C01.TJ (MSMg01no070_c01.g1)
ACCAG294222AG294223
length667686
length of high quality
(start - end)
449 (33 - 481)350 (70 - 419)
definitionCHROMAT_FILE: MSMg01no070_c01.b1 PHD_FILE: MSMg01no070_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:05 2005CHROMAT_FILE: MSMg01no070_c01.g1 PHD_FILE: MSMg01no070_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTATACGACTCCTATAGTCCGAGAATGCGCGGAATTCAGTTCTCATT
ACCCCCTCTAGGTGGCTCACAAGAGTCTGTAACTCTAAGTCCAGGGAATC
TGCTGCCCTCTCCTGGCCTCCATAGGTACGTGGCATATATATACACATAC
ATACACAAATAAAAATATTTTTTCAATAGAATAAGGATGTTGCTCAGTGG
TAGATGATTGATTACCATACATAAGACCCTGGGCTCAGTTGTTCTCTATC
CATCTATGATCTATCTATCAATCAATCATCTATCTATCTCATATATCATA
TATGATATATCAGATATATAGCAAGTATATATAGAAAATATATGTATAGC
TAATATGTGTGTATGTATGTATATACACACACACATATATATACATATAT
ATGTATATATATACGTATATATCTGTGTGTGTGTGTGCGTATATATATAT
ACATATATATAGAGAGAGAGAGAGAGAGAAATATACTTGAATGAATGATT
ATATCAAGCCAGTAGAGTTACCGATGGCATGCCTATCAAGTAAATCTTGA
GTTTGTTTGCTAGTCTTCCTGTATCCTGCGGTGACTTTGAACTTACTGTG
CACGCCGGCCGTCTCATGGCCTGGCGAACTCTTACTTACACTCTCTGGGC
TTCCTCCATGGACGGAA
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTGAAATTCTAGGCAGTTGTGAGCCACTTTGTGTGA
GTGCCAGAAATTGAACCTTGAGAACAAGAGTAGTAGGTGCTCTCAGCACT
GAGCCATCTCTCCAGTCCTATACAGACTATCCCAGAGAGTACCCAGTGGA
GTATTAACACTGCCTATCAAGAGAATGGAATGGTAATAAGTCACCGTGGG
AGGCTCACACTGTTCCAGTGTTCATCGTTTATCAAGCTCTGACCTTGAAC
CATGGCACCATCTGAACTATATGGTAGAAACGATAGTCACAGCCTCTCTA
GTGCAGTGGGAACCGTGCTCTGGATCTTATAAAGCAGATGTGTGTACAGG
CAGATGGCTCTGCCCAGTGCTGTGTGGACAGCAGGCAGAACTCAGATCCT
GGGTTTAGATATCTCCGTGACCAGTCCAGGGTGTTCTGGAGCAGCAAAGA
CCGTTGTAGGAGAGAGTCCTCCAGGAGAAACAGACTTGGTTTCTAGAGTA
CAAGGCAGGGCTTGGTGCTGTCTGTGCCTTTGGGCAATTGAACTGGCCCT
TGACAACCTTGAAACTGCTCCATCTGGCTGGTGGAAGAGTGCCCGGAGGA
CCTTTTGCCCTTTCTCCAAATGGTCTACTTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_c01.g1 MSMg01no070_c01.g1 CHROMAT_FILE:
MSMg01no070_c01.g1 PHD_FILE: MSMg01no070_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:05 2005
         (350 letters)



>mm_chr5_145632659_145633408
          Length = 750

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctaggcagttgtgagccactttgtgtgagtgccagaaattgaaccttgagaacaaga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctaggcagttgtgaaccactttgtgtgagtgccagaaattgaaccttgagaacaaga 260

                                                                       
Query: 61  gtagtaggtgctctcagcactgagccatctctccagtcctatacagactatcccagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtaggtgctctcagcactgagccatctctccagtcctatacagactatcccagagag 320

                                                                       
Query: 121 tacccagtggagtattaacactgcctatcaagagaatggaatggtaataagtcaccgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccagtggagtattaacactgcctatcaagagaatggaatggtaataagtcaccgtgg 380

                                                                       
Query: 181 gaggctcacactgttccagtgttcatcgtttatcaagctctgaccttgaaccatggcacc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gaggctcacactgttccagtgttcatcgtttagcaagctctgaccttgaaccatggcacc 440

                                                                       
Query: 241 atctgaactatatggtagaaacgatagtcacagcctctctagtgcagtgggaaccgtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgaactatatggtagaaacgatagtcacagcctctctagtgcagtgggaaccgtgct 500

                                                         
Query: 301 ctggatcttataaagcagatgtgtgtacaggcagatggctctgccc 346
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ctggatcttataaagcagatgtgtggacaggcagatggctctgccc 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)