Query= MSMg01no070_o17.b1 MSMg01no070_o17.b1 CHROMAT_FILE:
MSMg01no070_o17.b1 PHD_FILE: MSMg01no070_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:09 2005
(586 letters)
>mm_chr5_10421414_10422399
Length = 986
Score = 1050 bits (543), Expect = 0.0
Identities = 576/587 (98%), Gaps = 2/587 (0%)
Strand = Plus / Plus
Query: 1 acttttaaaagtggggaaatagaacttgaagtgtagagtagaaccaatttacatatatga 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 acttttaaaagtggggaaatagaacttgaagtgtagagtataaccaatttacatatatga 260
Query: 61 tatttggggcacatttgtgtgtggcagtgaaaatctggtatgcgaatttgtaataaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttggggcacatttgtgtgtggcagtgaaaatctggtatgcgaatttgtaataaaaat 320
Query: 121 ttgagcctgcagcccatctgcaggaaagccatgtggagagatagggacggggcacaagtg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttgagcctgcagcccatctgcaggaaagccatgtggagagatagggacggggcacaggtg 380
Query: 181 agtccgtatgggcagctgagaaccagacctacgcagaggaataggagtagaattttggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtccgtatgggcagctgagaaccagacctacgcagaggaataggagtagaattttggaa 440
Query: 241 tcaaattcacaag-caaattatctgtacatctcaggagtgctttgattcagtggcttggt 299
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaattcaga-gacaaattatctgtacatctcaggagtgctttgattcagtggcttggt 499
Query: 300 taagaggagccgttgacaggaactgcagtctctggtcccacttcaccgagttaaaaccta 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 taagaggagccgttgacaggaactggagtctctggtcccacttcaccgagttaaaaccta 559
Query: 360 cagacaggacatttaaggagtatggagagggagactaggaagaaagaaacagagctggga 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagacaggacatttaaggagcatggagagggagactaggaagaaagaaacagagctggga 619
Query: 420 atctctttccatttgctataaagctggcaatagttttatgcatttcccattgacaggaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atctctttccatttgctataaagctggcaatagttttatgcatttcccattgacaggaag 679
Query: 480 aagggtcaccagcctgagcccaagggttcacaaggacacaggtaagactagaataagttg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagggtcaccagcctgagcccaagggttcacaaggacacaggtaagactagaataagttt 739
Query: 540 gtacaagctggctaggcaggttgtcgctaggctagtcatggaccagg 586
|| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 740 gtccaagctggctaggaaggttgtcactaggctagtcatggaccagg 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_o17.g1 MSMg01no070_o17.g1 CHROMAT_FILE:
MSMg01no070_o17.g1 PHD_FILE: MSMg01no070_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:09 2005
(593 letters)
>mm_chr5_10585463_10586455
Length = 993
Score = 1123 bits (581), Expect = 0.0
Identities = 590/593 (99%)
Strand = Plus / Minus
Query: 1 caggacatccagggctatacagagaaacactgtctcaaaaaacaaaataacaaacaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 caggacatccagggctatacagagaaacactgtctcaaaaaacaaaataacaaacaaaac 704
Query: 61 aaaacaaaacaaaaacaaaaaccaaccaaacaaaaaaagacactgcaatgcctaacaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aaaacaaaacaaaaacaaaaaccaaccaaacaaaaaaagacactgcaatgcctaacaacc 644
Query: 121 aaggctgtgcttatgtcaacagtgcacattcactcagtttacttgcttcccacactgtcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaggctgtgcttatgtcaacagtgcacattcactcagtttacttgcttcccacactgtcg 584
Query: 181 cactatatttaaaaccacaaattttataaatggcattttacaataaaacaatattacata 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cattatatttaaaaccacaaattttataaatggcattttacaataaaacaatattacata 524
Query: 241 ttttaactgaactctatacaaagtagcatcttgtgtcttaatctctcaattttaagaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttttaactgaactctatacaaagtagcatcttgtgtcttaatctctcaattttaagaaaa 464
Query: 301 tgggcaaaataaccttataaaccttaatactgattgtcaattgacttaggacaggagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgggcaaaataaccttataaaccttaatactgattgtcaattgacttaggacaggagcct 404
Query: 361 gcagatatggctgtgagagattaaatatataggagcacagtgaccatttacctaacactc 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 403 gcagatatggctgtgagagattaactatataggagcacagtgaccatttacctaacactc 344
Query: 421 ttgctgccaggggttcagttcatagtagtctataccattttgaggtcacatatcagatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttgctgccaggggttcagttcatagtagtctataccattttgaggtcacatatcagatat 284
Query: 481 tcttcatatcacatatttacaatatgattcacaatgatagcaaaattgcacttatgaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcttcatatcacatatttacaatatgattcacaatgatagcaaaattgcacttatgaagt 224
Query: 541 agcagtgaatcaatattctgatttgtggtcaccaaaatatgggctactgttgt 593
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 223 agcagtgaatcaatattctgatttggggtcaccaaaatatgggctactgttgt 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
