BAC Information

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BAC

Clone NameMSMg01-070P22
Chromosome5 (Build37)
Map Location 143,715,136 - 143,870,808
singlet/doubletdoublet
Overlap geneFscn1, 2810055G22Rik, LOC667809
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070P22.T7 (MSMg01no070_p22.b1)MSMg01-070P22.TJ (MSMg01no070_p22.g1)
ACCAG294884AG294885
length701699
length of high quality
(start - end)
262 (42 - 303)240 (71 - 310)
definitionCHROMAT_FILE: MSMg01no070_p22.b1 PHD_FILE: MSMg01no070_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:15 2005CHROMAT_FILE: MSMg01no070_p22.g1 PHD_FILE: MSMg01no070_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,715,136 - 143,715,378)(143,870,569 - 143,870,808)
sequence
ATTTGCGGCGCTATACGACTCCTATAGTGCGAGAATACGGCGGAATTCCT
GAGCTTTGACACAGCTTTCCAAACCCATGTTTTGTAAGAGCCACCAGGCC
TGAAAACTCTGGGCCATGTCCCGTTTGTTGTGTCTAGGTCTCAGTTTCCT
GGAAGGCAGAGAATGCGTAGGTCCGTTGTTAGTGGAGACAGCAGTGGTGG
TAACAGCCTGGTCTACCCTCTTGGTCAGAGGGAGGCAGGCGGAGAGTAAC
TCAGGGCCTGGGGGCAACACCCAGCTGGGCCTGGGGCTAGCGTGGGCTCA
GCCAGGCAGTATGTGGGTCCTCCTACTTCCTAAGCTCTGATGGGCAAGTG
GTGCCAGTGGTACCAGGCTGCCCTGAGGGTCCCTCAGAGCATGTGACCAC
AGAGCCACAAAGAGGCTATTCATGGCCTCCGGTTCACGAGGCTGCCCCTT
TATTGAGGGCTTGAACCACAGATAGCTGTGTGGTCTGCAGGGAAGCTAGT
TCTGAGCTGTCTTGGCCAGCTACAGTAATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGCTGTGTACCCCTTTTTTGTTTTATGTTG
TTTCTGTTTTTTTATTTTTTTTTTTTTTGGGTTTTGGTTTGGTGTTTTTT
GTTTTGGTGTTGTTTTTTTGTTTTGTTTTTGGATTGTTTTTTTTGTCTGT
G
AATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCAGAAATTCAGCCTGAGACGAATGCAGTTAAAGTTTGGTCT
GACAAGGGACCAACACATTGCTAGAGAGTGAGGAAAGAACTATCAGGTGA
CACTACTTGGGTCAGCAAAAGCCTGATGAGCCGTGATTTTTGTACTATGG
TAAGGACTTGGGGACTGTCATGGTGACATGTAATTTAAAAAACAGCCAGA
CATGATGGTACATGCCTTTAACCCCAGCAGAGTCCAGTGTAGTCTACATA
GTAAGACCTTGTCTGTTAAACAAAACAAAAACAAAACAACCCTTAGTGCT
GTATGAAGAGGTCAAAGTATGGAGCCTAGAAGGCTGAACTTGAGCTAAAA
GAACAAAGTGTGATAAGCTCCTAGACAATTGATTTGTAAGATCTTTGAGG
ATTAGGGCTGTAGCTCATGAGTATGACACAGTATCTGCCAGGCCCTGTGT
TCAATTCCAGCACTGTACCCCACTTCATAAACAAATCAAAGGTGGGTGTG
TTCACTTACCTGCTTGCATTTCAGAATCTATTTTCTAATGGTTAAAATAA
ATTTTATCCTTTTATGTTACTTTTTCTAAAACCGTTTCTTGTATAGCAGG
CTGGTCTTCTTTTCGCAATGTAACTTAAGAAGACTTTTGACTATTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_p22.b1 MSMg01no070_p22.b1 CHROMAT_FILE:
MSMg01no070_p22.b1 PHD_FILE: MSMg01no070_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:15 2005
         (262 letters)



>mm_chr5_143714917_143715578
          Length = 662

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 20  acagctttccaaacccatgttttgtaagagccaccaggcctgaaaactctgggccatgtc 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 acagctttccaaacccatgttttgtaagagccaccaggcctgaaaactctgggccatgtc 279

                                                                       
Query: 80  ccgtttgttgtgtctaggtctcagtttcctggaaggcagagaatgcgtaggtccgttgtt 139
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccgtttgttgtgtctaggcctcagtttcctggaaggcagagaatgcgtaggtccgttgtt 339

                                                                       
Query: 140 agtggagacagcagtggtggtaacagcctggtctaccctcttggtcagagggaggcaggc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agtggagacagcagtggtggtaacagcctggtctaccctcttggtcagagggaggcaggc 399

                                                                       
Query: 200 ggagagtaactcagggcctgggggcaacacccagctgggcctggggctagcgtgggctca 259
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 400 ggagagtaactcagggcctgggggcaacacccagctgggcctggggctagtgggggctca 459

              
Query: 260 gcc 262
           |||
Sbjct: 460 gcc 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no070_p22.g1 MSMg01no070_p22.g1 CHROMAT_FILE:
MSMg01no070_p22.g1 PHD_FILE: MSMg01no070_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:15 2005
         (240 letters)



>mm_chr5_143870436_143871075
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagacgaatgcagttaaagtttggtctgacaagggaccaacacattgctagagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cctgagacgaatgcagttaaagtttggtctgacaagggaccaacacattgctagagagtg 314

                                                                       
Query: 61  aggaaagaactatcaggtgacactacttgggtcagcaaaagcctgatgagccgtgatttt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 313 aggaaagaactatcaggtgacgctacttgggtcagcaaaagcctgatgagctgtgatttt 254

                                                                       
Query: 121 tgtactatggtaaggacttggggactgtcatggtgacatgtaatttaaaaaacagccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgtactatggtaaggacttggggactgtcatggtgacatgtaatttaaaaaacagccaga 194

                                                                       
Query: 181 catgatggtacatgcctttaaccccagcagagtccagtgtagtctacatagtaagacctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 catgatggtacatgcctttaaccccagcagagtccagtgtagtctacatagtaagacctt 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)