BAC Information

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BAC

Clone NameMSMg01-071H03
Chromosome5 (Build37)
Map Location 129,613,083 - 129,613,400
singlet/doubletsinglet
Overlap geneGpr133
Upstream geneTmem132d, Fzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441
Downstream geneLOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H03.T7 (MSMg01no071_h03.b1)MSMg01-071H03.TJ (MSMg01no071_h03.g1)
ACCAG295227AG295228
length696703
length of high quality
(start - end)
322 (45 - 366)111 (73 - 183)
definitionCHROMAT_FILE: MSMg01no071_h03.b1 PHD_FILE: MSMg01no071_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:51 2005CHROMAT_FILE: MSMg01no071_h03.g1 PHD_FILE: MSMg01no071_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACATCCCGGAATACACACAGAGAAACCCTGTCTCAGAAATCA
ACAACAGCAACAAGAGGGAGCTTTGTACAGTGGCCTGGCCTTCAACCTGC
ACATAACGGAGGTTCAGGGAACGCTCTCTGCCCTTCTATAATAACATTTT
GAAGTAAGCATCCAGTGCACCCTCATCTCCATCACCCCAACACATTCTTC
CCTCCTTCTTGGGAGGTGTAAGGATTAGAAATTCAGAGCCAGCCTCCAGG
ATATAATGAGTTCTGGGTCAACCTGAGCTGCACAAGACCCTGATTCCCCT
GATTCAAATAGACAGATAAATAAATAGAAGCTTTCTGAGGTTTTCACATT
GAGCTAATTTTGAAAAATTCTATACAGGAAACAAACAGAATCTAACTATG
AGGCAACATCTGCATATCTGCATGCACTACACGTGTGTGTTTCTGTCATA
CATCTACATCTACTTCATACACATATACATATATATAATATATATGTATG
TGTATGACAGACACCTATTGATTTCTTGTTTTTACACGCACCACTTTACT
ACTTTAATATACTTCTTACGGGCAAAGCATATGGCTCAGCGGTAGAGCTG
TTCCTTTAACCTTTCTATGATCATCTGGTATTTATTGTTTAAATAG
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATCCCCAAGATTCATAGGGTGTAAAGA
GAGAACAGATTCCCACAAGCTGCCCTGTGATCTGCACACACATGCACCCA
CTCACACACACACACACACACACACACACACACACACACACACACTAATG
AATGAATGAATGAATGAATGAATGAATGAATGTAGACACAAATTATATGT
AGATGTCATTTTCCCTAAATGCTGTCCCTCACCACTGGCTCTAGTAGACA
GTGCTTTTCAAAAGCTCCCACATATGTATTGGTACATGCACTGTATCCAA
CAGTACTCCTACTGTGTGCCACAGTCATCCCTACTGGGTAAACAAGAACG
TTTTCTGCTCCACACCTGAACTTTGTAGTCGGCAACTAACACCTGAAGTT
GTTCCCCCATTGTCCCATTATCTTGCTAAAGCCACTACATCTTCCTCCTG
CAATGTTGATATATCACTGTTCCACGAGTCACACTCTTTGCAACGTTTCA
TTATCAATCCATCGCTATAGAGCATCCCTACATTGACATCGACCCCAAGT
CCATAAAGCCATTTTTATCCGCCCCCCCAGCAAATATCATCCATATTGTA
AATAATAATTGTCCTTCTTTACATCTCATTACTGTGTTCCTGTCCCTTAA
CAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h03.b1 MSMg01no071_h03.b1 CHROMAT_FILE:
MSMg01no071_h03.b1 PHD_FILE: MSMg01no071_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:51 2005
         (322 letters)



>mm_chr5_129612932_129613653
          Length = 722

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacatcccggaatacacacagagaaaccctgtctcagaaatcaacaacagc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattccaggacatccaggaatacacacagagaaaccctgtctcagaaatcaacaacagc 410

                                                                       
Query: 65  aacaagagggagctttgtacagtggcctggccttcaacctgcacataacggaggttcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aacaagagggagctttgtacagtggcctggccttcaacctgcacataacggaggttcagg 350

                                                                       
Query: 125 gaacgctctctgcccttctataataacattttgaagtaagcatccagtgcaccctcatct 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaacgctctctgcccttccataataacattttgaagtaagcatccagtgcaccctcatct 290

                                                                       
Query: 185 ccatcaccccaacacattcttccctccttcttgggaggtgtaaggattagaaattcagag 244
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 289 ccatcaccgcaacacattcttccctccttcttgggaggtggaaggattagaaattcagag 230

                                                                       
Query: 245 ccagcctccaggatataatgagttctgggtcaacctgagctgcacaagaccctgattccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 229 ccagcctccaggatataatgagttctgggtcaacctgagctgcacaagaccctgattgcc 170

                             
Query: 305 ctgattcaaatagacaga 322
           ||||||||||||||||||
Sbjct: 169 ctgattcaaatagacaga 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)