BAC Information

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BAC

Clone NameMSMg01-071J14
Chromosome5 (Build37)
Map Location 58,852,136 - 58,852,671
singlet/doubletsinglet
Overlap geneLOC100041385
Upstream geneEG666465, Pcdh7
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071J14.T7 (MSMg01no071_j14.b1)MSMg01-071J14.TJ (MSMg01no071_j14.g1)
ACCAG295344AG295345
length687690
length of high quality
(start - end)
540 (48 - 587)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no071_j14.b1 PHD_FILE: MSMg01no071_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:03 2005CHROMAT_FILE: MSMg01no071_j14.g1 PHD_FILE: MSMg01no071_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTGAATATCGCTGATTCTGTATTCACGACTTTTCAAGTCCCC
ACTTAAGGAGTGTTTGCTCTATGTTAGAATTCTCATCCACATAATAAAAC
AATAATTTATCCTGCAATAATTATTGTTTTTATTTTATAAAATGAAAAAC
TGAGGTAATAAATGACAGATTGAAATTACATATGTACCTCTTGACAGAAT
TGAATTCTTTTTCTAAAGGATACATCAATGCGTTGAAATTATTCACTATA
TTTTACTAAAAATCATCAAAGAGTGTGATATGTAGAAAAATACCATGGAG
ACTGTATTCTTATGTCATTTAGGATGTTTCAATGAAAAATATTTAACAAT
GTAAGAGAAAAGTTTTATTAAGTAAAATCCTGTGGAAAATAGAATGGGGT
AAGCATTTAGCTTTGAGGAATGTCTGCATTGACATTCTTTATAGCATATA
TCACCTAACAAAGCTCCAGTAAGACATTAATAAAGGCAAAGTTTTCTTCC
TCCCTTAACTGGATACCCATGGACAAACCTGACTGGATAATTCAGCCCAG
AGAAAAAAAGCCTAGTCATCAAATAATGGGGCTGGTAATGATACTCTGAG
CAGAATAGATAAAGCATCCATTGCCTCTGATGTCCTC
TCGATACAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTATAGAGATTGCCCCTCTGGCT
ATCTATCCCTTGCTTCAGGGAAGATGAGTGGGGATGAGAGCCCTGGGATG
TATGCTTGTAATAGTGTGTGTGTGTTGTGTGTTTGGCACGTGTTAGGTGC
AGCGTGTGCAGGCCCGCACTTTTGCCATGGTAGCGTAGGCTTTTGCTGCA
GTGGAGGCGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAAT
TATGCTATGTTATGCCTTGTTGTGTGAGGCTAAGAACTGCACTAAGAATA
GCTTGCTGTTGGCATCCTGTGGAACGTATGTCCTATTGCATGAATGTTCA
GTGTCCTAGTTCCCCCCCTCCTGTAAAAACGACACGTGAGCTGTTCTAGA
CCTCTCTGCCTGATGATCCCAACGGATGGTTTTGAGTAGCGCCCCTATGC
TTCCTCACTCGTTTACCTGACCTCTACCTTCACCCATGAGGCTTGCTTGT
TCCCATTACCATCTGCCCATACATTATTCCCCATCTTTGCCCCTTTTTAT
GCCCCTGCCTTTTATTTTTTCCCTTCCTCCCCACCTGCGCGTTTTCCATG
ATAGACTATTAATTTTGCGGACATCTATCCCTTGTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_j14.b1 MSMg01no071_j14.b1 CHROMAT_FILE:
MSMg01no071_j14.b1 PHD_FILE: MSMg01no071_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:03 2005
         (540 letters)



>mm_chr5_58851932_58852871
          Length = 940

 Score =  990 bits (512), Expect = 0.0
 Identities = 530/536 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctgaatatcgctgattctgtattcacgacttttcaagtccccacttaaggagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctgaatatcgctgattctgtattcacgacttttcaagtccccacttaaggagt 264

                                                                       
Query: 65  gtttgctctatgttagaattctcatccacataataaaacaataatttatcctgcaataat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttgctctatgttagaattctcatccacataataaaacaataatttatcctgcaataat 324

                                                                       
Query: 125 tattgtttttattttataaaatgaaaaactgaggtaataaatgacagattgaaattacat 184
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 325 tattgtttttattttataaaatgaaaaacggaggtaagaaatgacagattgaaattacat 384

                                                                       
Query: 185 atgtacctcttgacagaattgaattctttttctaaaggatacatcaatgcgttgaaatta 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 atgtacctcttgacagaattgaattctttttctaaaggatacatcaatgccttgaaatta 444

                                                                       
Query: 245 ttcactatattttactaaaaatcatcaaagagtgtgatatgtagaaaaataccatggaga 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcactatattttactaaaactcatcaaagagtgtgatatgtagaaaaataccatggaga 504

                                                                       
Query: 305 ctgtattcttatgtcatttaggatgtttcaatgaaaaatatttaacaatgtaagagaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtattcttatgtcatttaggatgtttcaatgaaaaatatttaacaatgtaagagaaaa 564

                                                                       
Query: 365 gttttattaagtaaaatcctgtggaaaatagaatggggtaagcatttagctttgaggaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttttattaagtaaaatcctgtggaaaatagaatggggtaagcatttagctttgaggaat 624

                                                                       
Query: 425 gtctgcattgacattctttatagcatatatcacctaacaaagctccagtaagacattaat 484
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctgcattgatattctttatagcatatatcacctaacaaagctccagtaagacattaat 684

                                                                   
Query: 485 aaaggcaaagttttcttcctcccttaactggatacccatggacaaacctgactgga 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 aaaggcaaagttttcttcctcccttaactggatacccatgaacaaacctgactgga 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)