Query= MSMg01no071_j23.b1 MSMg01no071_j23.b1 CHROMAT_FILE:
MSMg01no071_j23.b1 PHD_FILE: MSMg01no071_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:05 2005
(393 letters)
>mm_chr5_54478708_54479506
Length = 799
Score = 690 bits (357), Expect = 0.0
Identities = 383/399 (95%), Gaps = 13/399 (3%)
Strand = Plus / Minus
Query: 1 gaattcaatcccatagtacacactgctgactattctttcaaattagaaagtaactgacca 60
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcaatcccatagtaaatactgctgactattctttcaaattagaaagtaactgacca 455
Query: 61 gtgtgccacctgtcacctgtcacctctgctcgtttactcccagaccctcaacagaagccc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtgtgc-------cacctgtcacctctgctcgtttactcccagaccctcaacagaagccc 402
Query: 121 ctttttcttttttcacttttgtctttttc------tgttctttttgctcttgactccata 174
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 401 ctttttcttttttcacttttgtctttttctttttttgttctttttgctcttgactccata 342
Query: 175 actgcaccacaactataataatctttccaaaaacaatggcaaaaatactttgtccaaact 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 actgcaccacaactataataatctttccaaaaacaatggcaaaaatactttgtccaaact 282
Query: 235 cccagacagagctgggaagttggctcagcattaaagcactgccttgtaaccaaaagaatc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cccagacagagctgggaagttggctcagcattaaagcactgccttgtaaccaaaagaatc 222
Query: 295 agagttaagatctcagaacccagagaattgccagataagtgtggccagctgcctgtaatt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agagttaagatctcagaacccagagaattgccagataagtgtggccagctgcctgtaatt 162
Query: 355 taattcccagaaggctgacacagagaatccccagagcaa 393
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 161 taattcccagaaggctgagacagagaatccccagagcaa 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 799
Length adjustment: 9
Effective length of query: 384
Effective length of database: 790
Effective search space: 303360
Effective search space used: 303360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no071_j23.g1 MSMg01no071_j23.g1 CHROMAT_FILE:
MSMg01no071_j23.g1 PHD_FILE: MSMg01no071_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:05 2005
(454 letters)
>mm_chr5_54335163_54336022
Length = 860
Score = 756 bits (391), Expect = 0.0
Identities = 435/453 (96%), Gaps = 6/453 (1%)
Strand = Plus / Plus
Query: 1 agtaggactgctcccaccagatgcatgtcctcatagactcgacgtgtgtccttgggagg- 59
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagcactgctcccaccagacgcatgtcctcatagactcgacgtgtgtccttgggagga 260
Query: 60 -----tgcagatacagctaagacgaggccatgtggaatcaaatcaggtcttctagaagac 114
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttctgcagatacaactaagatgaggccatgtggaatcaaatcaggtcttctagaagac 320
Query: 115 catatgagacacagtacagacacagtcacaaagaaaagagacctgggatgacagaggcgg 174
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 catatgagacacagtacagacacagtcacaaagaaaagagacctgggatgaaagaggcgg 380
Query: 175 agactgaattgtgcagctttgagccaaggagtcacagagatggtctctgtatagccagaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 agactgaattgtgcagctttgagccaaggagtcacagagatggtctctgtaaagccagaa 440
Query: 235 gctagggagagctgtgggagagctgtcctgggagcagcctgcagatagagagaccaactc 294
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gctagggagagctgtgggagagctgtcctgggagcagcctgcagagagagagaccaactc 500
Query: 295 tcggaaccttttgaatttgtagttcagttgtttagaacttttgaaagaatgagtctctga 354
|||||||| ||||||||| || |||| ||||||||||||||||||||||||||| |||||
Sbjct: 501 tcggaaccatttgaatttatatttcacttgtttagaacttttgaaagaatgagtttctga 560
Query: 355 gttagtgagggagaataaataaggaagtgatcagatacctttccaagcattctgaacccc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttagtgagggagaataaataaggaagtgatcagatacctttccaagcattctgaacccc 620
Query: 415 caggacagtgtgaacatctttatttttggggtt 447
|||||||||||||||||||||||||||||||||
Sbjct: 621 caggacagtgtgaacatctttatttttggggtt 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 860
Length adjustment: 10
Effective length of query: 444
Effective length of database: 850
Effective search space: 377400
Effective search space used: 377400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
