BAC Information

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BAC

Clone NameMSMg01-071L06
Chromosome5 (Build37)
Map Location 30,202,074 - 30,202,180
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662
Downstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071L06.T7 (MSMg01no071_l06.b1)MSMg01-071L06.TJ (MSMg01no071_l06.g1)
ACCAG295423AG295424
length710730
length of high quality
(start - end)
107 (104 - 210)44 (72 - 115)
definitionCHROMAT_FILE: MSMg01no071_l06.b1 PHD_FILE: MSMg01no071_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:12 2005CHROMAT_FILE: MSMg01no071_l06.g1 PHD_FILE: MSMg01no071_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGACCGCGGAA
TTCTCTCCAGACCCTTGTCTGACTCACTCCTTCCTGTCCATCAGGCTTCA
GTCCGTGTGTCTCCTTAACCAGCTCTTCTCCATTCATCCAATCTGAAACA
TCTCTGCTGTGGATCTTTGTCTCATGACTTTCATTTTCTTATAGCCCATG
GCCCATCCTGAGATGTCTTGCCTAGTTTAGAGAAACTGCCTCTCTGCTTG
AATTGTTTTCTGTCTGCTCCGACCGGCTAACGAGAAAATGTCCCTCACGG
AGAGACAATACGTTACAATGTATTATTTGCCATGCTCCTTGCGATCCTCA
TAACTCACATATATGCTAGGAGAATCATGCTTTGTAAAAGTGTCTGATAT
ATGTTTAGCCCCAACCCACACTATAGGCCCACATATAATGAGCGCCCCTT
CCTGCTAATAGCATCATCAATACCACTTTTCCTCTACTTTTACTTGCACT
TTTTGCGTCATGTACCTATCTTATCCACCACACCTACTTGTTTTTTTGTT
TCCCTAATCCCGCTAATTCTGTTTTTCACCTTCCCCACCCCCCCTTTATT
TTTAACCACCCCTCCCCGCTCCTTCCTTTTTGTCTCCCTTTACTTTTCAT
CCACTTCACCGCCTATTCTTACTTCCACTTCACCTTTAACACCTATACCT
CCTTTCTGCC
CGATGATAGTGCGAGGCCTGGCGACCGCCCGCTTTCACACTTGAGGNGAA
CTATAGAAGTATCCCCGAAATTCTTTTTTTTTTCTTTTTTTTCTCGAGAC
AGGGTTTCTCTGTGTATTCCTGGCTGTCCTGCAACTCACTCTGTATACCA
GGCTGGCCTGGAACTCATATATATGCCTGTCTCTGCTTCCCAAGCGCTGG
GATTAAAGGCATTTGCCACCACTGTCCTGCGTGTTATAATTCTTAAATGT
CATGAGGCAAGAGGCTTCAGCCAGACTCTGATTAGAGGGCACCCCTTTCC
CTATCATTAACTCACATTTTTCTTTGCCTTTCATCTCTGTCTTCCAATAA
ATCTTGTTTGATCCTCTGTTTTTCCTGCTCCATGTTTTCTCACCCTCTCT
TCCTTTTTCTTACCCCCCCCACCCTATGCTTTCTGTCATTGATTTTTGTA
TTGTTTTTTTTTTGCCCTCCCTATTTCTTTTCTCACACCCGCTACTTATT
TTCCCTTCACCTTTAACCTTTTCCCCTATACCTTTTATAATTTTCTCCAC
TTATTCTCACTTACACCTTTTTCTTCTATTTCCCTCCTTCCCTCCTCCCT
ATTTCCCCCCCATTTATCACTCCCTCTACTGCCTTACCTTTCTCTTTTAC
TCCCCCCCCCCCTCCCCTCCCCCATTTTTCTCTTTTATCCCTTCTATTAT
ATTACTTTTTATCTTCTCCTAATTCTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_l06.b1 MSMg01no071_l06.b1 CHROMAT_FILE:
MSMg01no071_l06.b1 PHD_FILE: MSMg01no071_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:12 2005
         (107 letters)



>mm_chr5_30201874_30202380
          Length = 507

 Score =  199 bits (103), Expect = 3e-56
 Identities = 106/107 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgtgtctccttaaccagctcttctccattcatccaatctgaaacatctctgctgtgga 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 307 cgtgtgtctccttaaccagctcttctccattcacccaatctgaaacatctctgctgtgga 248

                                                          
Query: 61  tctttgtctcatgactttcattttcttatagcccatggcccatcctg 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctttgtctcatgactttcattttcttatagcccatggcccatcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)