BAC Information

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BAC

Clone NameMSMg01-071L07
Chromosome5 (Build37)
Map Location 125,392,764 - 125,393,061
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071L07.T7 (MSMg01no071_l07.b1)MSMg01-071L07.TJ (MSMg01no071_l07.g1)
ACCAG295425AG295426
length710697
length of high quality
(start - end)
301 (43 - 343)229 (75 - 303)
definitionCHROMAT_FILE: MSMg01no071_l07.b1 PHD_FILE: MSMg01no071_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:12 2005CHROMAT_FILE: MSMg01no071_l07.g1 PHD_FILE: MSMg01no071_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAAT
TCACAGTGTATCCCAGGCTGGCCTTGATCCTCCCCCGTCCCCATGCTGGA
TTACAGATGGTTAGCCCACCTGGCTCCCCTGACTTAGAGGTTCAAGTTTT
TCTTCAGAATATGTGATGCCGACTCTGAGGTTCCCAGCAAGCAATGCTGG
AATGTTCCTGATACCTGCCAAGCCCTGGGATGGTCAGGATCCCCTCCCAA
AGCCCTTGCCAAGCCGGCTGGAATGTCTGAATTGGCTTAAGAAAAGAATT
CAAAAGCTGAACTTGCTAAGCCTGAGGCCAAAGGGAAGCAGGGTAATGGG
GGCGGGGGGGGGGGTCACGAGGCGCATCCCGGGTTCCTGTTTGTTCCAAA
TATGAAGGGAATTAAACTGAGGGAACTCAGAATTGCCCCCCCTTTCTTCC
TCAATTCTGTGATTGGTGTCTATGTTGTTGCAGTTTTTTTTTATTTTCAT
TATATCCCCCCCTTTTTTTTTTCTCTTCCCCCTTTCTCCTCTCTTTATTT
TTTTCCCCACCTTTCTTTTTTTTTTTTTTCTCTCTTTTCTCCTCCCCCTC
CTCTTTCCTTTTTTCTTTTTTCTCTCCCTCTTTTTTCTTCCTCCGCGTTC
TTTTTTTTTTTCCTTTTTTCCGCCCCTTTTTCTCCTCCTTTTTTGTTCCT
TTCTTTTTTC
NTCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTTTATATGCTCACTGGAAATGGA
ATTGTTTTTTTGTTTGTTTGGGTTTTTTTTTGTTTCTGTTTTTTGTTTTT
TTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT
TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCG
AGTGCTGGGATTAAAGGCGTGCACCACCAAGCCCGGCCAGAGTAATTGTT
TATAAGCAAAGCAATGAAGTCCCTGTGGTGACAAGAACCACATCTTTTCT
TACCTCTTCGTGGGAGAGGTTGGAGGTGCACCTGTGTGTGCAGGTCCTGT
TAAGTTGTTGTTCCCCACCCGATATTCTCTGTCTCTTTTGGAGATGAGGT
CTCTCGCTTTCCAACTGGGTTACGCTGGCTGGTTCTCGAACCCCAGGGAA
CCCACTTGTCTCCACTTTTGAGGGACCGACATGATCCACTGCTCTTGTTT
TGCATACGAGTTGTTGTTATTTGAACTCATATCCTTATGCTTGAGCTATA
AGCACTTTAGACTTGGAAGCCATCCCCCCTAACTTCTGTGTTTTATGTGT
TTGTAACAGCCCTGCATCTGGACCATTTCCTTGCCGCTGCTCCGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_l07.b1 MSMg01no071_l07.b1 CHROMAT_FILE:
MSMg01no071_l07.b1 PHD_FILE: MSMg01no071_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:12 2005
         (301 letters)



>mm_chr5_125392561_125393261
          Length = 701

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacagtgtatcccaggctggccttgatcctcccccgtccccatgctggattaca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaattcacagtgtagcccaggctggccttgatcctcccccgtccccatgctggattaca 442

                                                                       
Query: 64  gatggttagcccacctggctcccctgacttagaggttcaagtttttcttcagaatatgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggttagcccacctggctcccctgacttagaggttcaagtttttcttcagaatatgtg 382

                                                                       
Query: 124 atgccgactctgaggttcccagcaagcaatgctggaatgttcctgatacctgccaagccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccgactctgaggttcccagcaagcaatgctggaatgttcctgatacctgccaagccc 322

                                                                       
Query: 184 tgggatggtcaggatcccctcccaaagcccttgccaagccggctggaatgtctgaattgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggatggtcaggatcccctcccaaagcccttgccaagccggctggaatgtctgaattgg 262

                                                                     
Query: 244 cttaagaaaagaattcaaaagctgaacttgctaagcctgaggccaaagggaagcaggg 301
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cttaagaaaagaattcaaaagctgaacttgcaaagcctgaggccaaagggaagcaggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)