Query= MSMg01no071_o04.b1 MSMg01no071_o04.b1 CHROMAT_FILE:
MSMg01no071_o04.b1 PHD_FILE: MSMg01no071_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:26 2005
(313 letters)
>mm_chr5_77829369_77830081
Length = 713
Score = 536 bits (277), Expect = e-157
Identities = 304/313 (97%)
Strand = Plus / Minus
Query: 1 aaaccatggggacccacgaatgtccctccctttgggagtttatgactgacaagatcagaa 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 513 aaaccagggggacccacgaatgtccctccctttgggagtttatgagtgacaagatcagaa 454
Query: 61 agttttgaaaatgatggaaaatgagatatacccagtagttcatgtgcctgttcacttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agttttgaaaatgatggaaaatgagatatacccagtagttcatgtgcctgttcacttaag 394
Query: 121 gtaatagtaaagatgtccccagatatccttcactccttaggagtggagtcagggtagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtaatagtaaagatgtccccagatatccttcactccttaggagtggagtcagggtagagg 334
Query: 181 ggctcaaaatgcccctggtgaagagcacacctatacacactgtacactaagactctggtg 240
|||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||||||
Sbjct: 333 ggctcaaaatgcccatggtgaggagcacccctatacacactatacactaagactctggtg 274
Query: 241 tagcaggaaaagaaagccacagtaatggggggaagcgtgtctccttttcacttgaaatgt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 273 tagcaggaaaagaaagccacagtaatggggggaagcgtgcctccttttcacttgaaatgt 214
Query: 301 gtatttgttaaat 313
||| ||||||||
Sbjct: 213 atatgtgttaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no071_o04.g1 MSMg01no071_o04.g1 CHROMAT_FILE:
MSMg01no071_o04.g1 PHD_FILE: MSMg01no071_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:26 2005
(310 letters)
>mm_chr5_77780520_77781233
Length = 714
Score = 557 bits (288), Expect = e-163
Identities = 306/314 (97%), Gaps = 4/314 (1%)
Strand = Plus / Plus
Query: 1 tgctttgaacttaggcaagcaggattctcttaattcctattttttttttttt----aaac 56
|||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 201 tgctttgaacttaggcaagcaggattctcttaattcttttttttttttttttttttaaac 260
Query: 57 aaagtaacttcagttcttccattagttcctgtagctgtatctgtacgaccacagcagggc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtaacttcagttcttccattagttcctgtagctgtatctgtacgaccacagcagggc 320
Query: 117 tgcttcgaagaaatgggaggagaataatttcaggcaggtgacctttgccaagcctgggtg 176
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tgcttcgaagaaatgggaggagaataatttcaggcaggcgacctttgccaagcctgggtg 380
Query: 177 ttctgagaatgaaacggttgccagctcttgctacttaccagcacccagcccgttacttca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgagaatgaaacggttgccagctcttgctacttaccagcacccagcccgttacttca 440
Query: 237 tgcttttctggaccaccccgggtctgaatggccaggttttcccggtcaccaggcaagagt 296
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tgcttttctggaccaccccgggtctgaatggccagattttcccggtcaccaggcaagagt 500
Query: 297 tctgtccgctgaac 310
||||||||||||||
Sbjct: 501 tctgtccgctgaac 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 714
Length adjustment: 9
Effective length of query: 301
Effective length of database: 705
Effective search space: 212205
Effective search space used: 212205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
