BAC Information

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BAC

Clone NameMSMg01-072F11
Chromosome5 (Build37)
Map Location 28,603,433 - 28,603,800
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp6, Speer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1
Downstream genePrr8, Shh, LOC100039258, Rnf32, EG664949, Lmbr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072F11.T7 (MSMg01no072_f11.b1)MSMg01-072F11.TJ (MSMg01no072_f11.g1)
ACCAG295908AG295909
length1,139688
length of high quality
(start - end)
---369 (79 - 447)
definitionCHROMAT_FILE: MSMg01no072_f11.b1 PHD_FILE: MSMg01no072_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:02 2005CHROMAT_FILE: MSMg01no072_f11.g1 PHD_FILE: MSMg01no072_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTTTTCCCCCCCCCCNCCCTTTCTCCCCTTCTTTTTTTCCTTTTTT
TAATTTTTTTTTGTTCTTTTTTCTGCTATATCCCCAAATTGTTGTTCGCT
TATTCTACCACCTATTATTTTAATATTAAAGAACATTTAAATCTCCCGGA
TATAAATCAGGAGATCAAAGTACACATTTATTTTTCGAAATAACTGCCCG
CGTCATGGCCCTCACCAAGTAACGTCAAATTCCGCATCATACATGTACCC
ACTCACGCATAGTCTCGCGGCGATAATAACCACCAGTACAAGGATGTATT
CACCCCATTTTAAACCCCTACACCAAATAATAAACATATAACCCAATATC
GTAAAGTACTATTAGACACGGGTTGAGGAAGAAAAGCCCCACAAATTGTG
CCAGCAATAACGGATAAAGTGTCGCACCTAGCGCATACACGGACTGATAA
GACGCTATTCCCGCGGCGAACGACCCTGCAGTAACATATGGAATGATGGA
ATATTATAGCGTAATTATGCACCCATATACGCGTATACCACAATCGGTAT
TACAACAGATCATGTATAAATGGGGCCGACAAAACAGGATCACTCAGTAT
CGTACTCTGAGGGTACAGAATAAACTACCGCGCAAATTGAGGGCAGCACG
TATCGTCAAGGTTATGATGATATCTCGGGTTATACAGTGTCCGCATAAAA
TTCAGCTAAAATTACTGTTACCGAAATGCTCAACTGACGACATATTAATA
ATGCCATAGGCCGTAAACAAAGAACATATAATTGGGCGACGACGCTCAGC
TGTACTCCGAACATCTGTCCTGAGAAAACGAGTTGTTCGAAGACTGATCT
CTCTCTCACAAAATAAAATTTCGTGATAAATTAATATAGGATATTCTCTA
TATATAATACACAATGCGCGCCCGCGTTAATTCTTCGAAAATAATATCGC
GCGCGGAATAATAGCGCGCGAGAAATAGTGGGCTAATATACACCTGTTAT
CGTCCCGCTTATTCGCGCTACCACATGAATACGTTGTATAACGGCTGCGA
TACATATGGTTTGGTATTATTATAACGGATAACAGAGTTGATAACCGCTA
CGGTGCATTACGACACAATATGTTATTGTGTATATGATG
TACCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCAGCTTCTCTGGAGAAC
ACTTGATTGGACAAACTGGGACATTGCTGGGCCTTCTGTGTCCTGTACTT
CATATTCCCTTCTTGGCTTCTTCCTCTCCTGAAGTGAAAAGGGATTTCCA
GGAGTTTAAAAAGAAAACAAAATGATAACAAACACAAACCACAGAGTGCC
AAACCTTTAAAGGGTATAGAGCATTGCACAGTTCCAGGGGTTGACCTGAT
TGGGGGTGGGGGATGAGGGGATGAAAGCATACAAACAGCTGGACTCACAT
GATTGAGCTTCTGGATAGAGATGCCACAGCCCCGCTAGAAGCTCAGCATT
ATTTTATTATATACTGTTGAACAGGCAGGTATGGTTATGGCAAACAGAGG
CATCTGGGTTCTTATATACAGCTGACCAAGGAGGCAGGCTTAACTAAGCC
AGTTCAAGTGCTTTGTATGCGAGTAATTTTCACACTGTAAACATGGGGAA
GGGTGGAGTTATGATGTACATTCTCCTCACGCTCTACCAACATCTGCTCT
CAAAACCATTGTAAGGTCTTGCTCTGCATGACCCTTACCCATTAGGTTTT
TGCTTCTTATGAGTCTTACCCGTGGCAAGCTTTTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_f11.g1 MSMg01no072_f11.g1 CHROMAT_FILE:
MSMg01no072_f11.g1 PHD_FILE: MSMg01no072_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:02 2005
         (369 letters)



>mm_chr5_28603233_28604000
          Length = 768

 Score =  659 bits (341), Expect = 0.0
 Identities = 362/369 (98%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagccagcttctctggagaacacttgattggacaaactgggacattgctgggccttctg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 201 acagccagcttctctggagaacacttaattggacaaactgggacattgctgggtcttctg 260

                                                                       
Query: 61  tgtcctgtacttcatattcccttcttggcttcttcctctcctgaagtgaaaagggatttc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcctggacttcatattcccttcttggcttcttcctctcctgaagtgaaaagggatttc 320

                                                                       
Query: 121 caggagtttaaaaagaaaacaaaatgataacaaacacaaaccacagagtgccaaaccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagtttaaaaagaaaacaaaatgataacaaacacaaaccacagagtgccaaaccttt 380

                                                                       
Query: 181 aaagggtatagagcattgcacagttccaggggttgacctgattgggggtgggggatgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggtatagagcattgcacagttccaggggttgacctgattgggggtgggggatgagg 440

                                                                       
Query: 241 ggatgaaagcatacaaacagctggactcacatgattgagcttctggatagagatgccaca 300
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 441 ggatgaaagcatacaaacagctggactcaca-gattgagcttccggatagagatgccaca 499

                                                                       
Query: 301 gccccgctagaagctcagcattattttattatatactgttgaacaggcaggtatggttat 360
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 gccccactagaagctcagcattattttattatatactgttgaacagggaggtatggttat 559

                    
Query: 361 ggcaaacag 369
           |||||||||
Sbjct: 560 ggcaaacag 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 768
Length adjustment: 9
Effective length of query: 360
Effective length of database: 759
Effective search space:   273240
Effective search space used:   273240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)