Query= MSMg01no072_l20.b1 MSMg01no072_l20.b1 CHROMAT_FILE:
MSMg01no072_l20.b1 PHD_FILE: MSMg01no072_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:34 2005
(578 letters)
>mm_chr5_115891457_115892434
Length = 978
Score = 818 bits (423), Expect = 0.0
Identities = 423/423 (100%)
Strand = Plus / Minus
Query: 155 gagtcatctctcctgcccccttcttttaattaaaaaatatttttatgcaatgtgcacaat 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 gagtcatctctcctgcccccttcttttaattaaaaaatatttttatgcaatgtgcacaat 919
Query: 215 gccatgcagaataggagccagatcctctagaactaaggttgcaggttgttctgaggtgcc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 gccatgcagaataggagccagatcctctagaactaaggttgcaggttgttctgaggtgcc 859
Query: 275 atgtgggtgctggggaattgaacctgggtccttcaaaagaccagctagtgttcttaacca 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 atgtgggtgctggggaattgaacctgggtccttcaaaagaccagctagtgttcttaacca 799
Query: 335 ctgagccatcgtcccagtcccttgggtgcttttcaaagcacagctgactcttagctgatt 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctgagccatcgtcccagtcccttgggtgcttttcaaagcacagctgactcttagctgatt 739
Query: 395 tcaaggctcatggctagtcccatcacctactccagggagcctcccgtggttgtttaggtg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcaaggctcatggctagtcccatcacctactccagggagcctcccgtggttgtttaggtg 679
Query: 455 gctccttggacctccatggccccgaatccctctatagaagacactcctgtctttcaggtg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gctccttggacctccatggccccgaatccctctatagaagacactcctgtctttcaggtg 619
Query: 515 aaccacagcccagtgacagcagatcctacccctcacacaaaacacaacaaagacaacaat 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaccacagcccagtgacagcagatcctacccctcacacaaaacacaacaaagacaacaat 559
Query: 575 aac 577
|||
Sbjct: 558 aac 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_l20.g1 MSMg01no072_l20.g1 CHROMAT_FILE:
MSMg01no072_l20.g1 PHD_FILE: MSMg01no072_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:35 2005
(507 letters)
>mm_chr5_115732222_115733128
Length = 907
Score = 791 bits (409), Expect = 0.0
Identities = 468/507 (92%), Gaps = 33/507 (6%)
Strand = Plus / Plus
Query: 1 accctcactcacaggactcctctgctgcgtccccctcttccgcatgccaccgcactggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 accctcactcacaggactcctctgctgcgtccccctcttccgcatgccaccgcactggca 290
Query: 61 ggggtcctcccaccagtgtcgtttctgtccctgtgctgtgctctttgtggctgttctcat 120
|||||| |||| ||||||||||||||||||||
Sbjct: 291 ggggtc--------agtg----------------------ctctttgtggctgttctcat 320
Query: 121 ttgctgggctctcattcgccgcagtgctggggattaagtcccgggcttcctcatccagtc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctgggctcttattcgccgcagtgctggggattaagtcccgggcttcctcatccagtc 380
Query: 181 atgatctacgccctcattcccttgctctctcccttcttgttgctcagtttcctctttcag 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatctatgccctcattcccttgctctctcccttcttgttgctcagtttcctctttcag 440
Query: 241 ttctctagtatgcaacctgggtttagaagtattgtgctgtggcctgagtgtaaactgtct 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttctttagtatgcaacctgggtttagaagtattgtgctgtggcctgagtataaactgtct 500
Query: 301 ataaagcagatgacgtaactggtcactggttagtacacacccctatgctttcctttctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaagcagatgacgtaactggtcactggttagtacacacccctatgctttcctttctgt 560
Query: 361 cttcttctttttttttttctagacagggtttctctgtgtagccttggctgtcctgggact 420
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 -tt--tctttttttttttcttgacagggtttctctgtgtagccttggctgtcctgggact 617
Query: 421 cactctgttgtccagactggcttcttactcagagagctccccctgcctctgcctacacca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cactctgttgtccagactggcttcttactcagagagctccccctgcctctgcctacacca 677
Query: 481 tcgccccagtcctcctcttttcttttc 507
||| |||||||||||||||||||||||
Sbjct: 678 tcgtcccagtcctcctcttttcttttc 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
