Query= MSMg01no072_m18.b1 MSMg01no072_m18.b1 CHROMAT_FILE:
MSMg01no072_m18.b1 PHD_FILE: MSMg01no072_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:39 2005
(588 letters)
>mm_chr5_97807966_97808949
Length = 984
Score = 1118 bits (578), Expect = 0.0
Identities = 584/588 (99%), Gaps = 4/588 (0%)
Strand = Plus / Plus
Query: 1 tcacttccttcttcatattccatctgttatccacatacatgttcatcattgtgacagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacttccttcttcatattccatctgttatccacatacatgttcatcattgtgacagtca 260
Query: 61 ctgttctagtgataagttagttctatgagtcaatgattttgaccacctctaccccaggcc 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttctagtgataagtt----ctatgagtcaatgattttgaccacctctaccccaggcc 316
Query: 121 agtagagagaagaaaggaaataatcagacaatttaaaatttgaggatatatgtaaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agtagagagaagaaaggaaataatcagacaatttaaaatttgaggatatatgtaaattta 376
Query: 181 catgcctcctttgacatatgtaaatggaattctgatctccctcatttatttattacatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catgcctcctttgacatatgtaaatggaattctgatctccctcatttatttattacatgt 436
Query: 241 aaatgagtacactgtagctgtctttggacataccagaagagagcacggatctcattacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaatgagtacactgtagctgtctttggacataccagaagagagcacggatctcattacag 496
Query: 301 atggttgtgagccaccatgtggttgctgggaattgaactcaggacctctggaagagcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atggttgtgagccaccatgtggttgctgggaattgaactcaggacctctggaagagcagc 556
Query: 361 cagtactcctaaccactgagccatctctccagccccgaaagatctccttttgaatttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagtactcctaaccactgagccatctctccagccccgaaagatctccttttgaatttgag 616
Query: 421 gataaagaatctctataggaaagctattagcattaatgtgtacctatcacaaaatgacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gataaagaatctctataggaaagctattagcattaatgtgtacctatcacaaaatgacac 676
Query: 481 taactcattacaacaaaatatgaaagacaagatatgtttttataactactttgtaatgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taactcattacaacaaaatatgaaagacaagatatgtttttataactactttgtaatgag 736
Query: 541 aaaagttggggttccggaaatttttccagtggccaaattaaggataaa 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaagttggggttccggaaatttttccagtggccaaattaaggataaa 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 984
Length adjustment: 10
Effective length of query: 578
Effective length of database: 974
Effective search space: 562972
Effective search space used: 562972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_m18.g1 MSMg01no072_m18.g1 CHROMAT_FILE:
MSMg01no072_m18.g1 PHD_FILE: MSMg01no072_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:39 2005
(491 letters)
>mm_chr5_97960137_97961027
Length = 891
Score = 930 bits (481), Expect = 0.0
Identities = 487/489 (99%)
Strand = Plus / Minus
Query: 3 aaactaactgctttagaaagaaagacatgtctatttctaacatttgaaagttcgataatc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaactaactgctttagaaagaaagacatgtctatttctaacatttgaaagttcgataatc 632
Query: 63 tggtgttgtcatcgtctgtaggagttttgcagagccatgttctaggctatctgcatactc 122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 631 tggtgttgtcatcgtctgtaggagttttgcatagccatgttctaggctatctgcatactc 572
Query: 123 agtttgtcttctgtgaaaaactcctcaatctaagtctgtggtttatggccattaactaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agtttgtcttctgtgaaaaactcctcaatctaagtctgtggtttatggccattaactaag 512
Query: 183 gtctactggggttgtctacacttattcctggcaaacctgtacaacccagcaggcttaatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtctactggggttgtctacacttattcctggcaaacctgtacaacccagcaggcttaatt 452
Query: 243 aatgatgatttttatttaatttttaaagtgaattctttataaaacagagttctaagtacg 302
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 451 aatgatgatttttatttaatttttaaagtgaattctttataaaacagagtgctaagtacg 392
Query: 303 gcagtcttcatagtagcattagccccagtacccaagaggaggaaatagtgttctgaagag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcagtcttcatagtagcattagccccagtacccaagaggaggaaatagtgttctgaagag 332
Query: 363 attagtgaacagtctagaggtgggaggtacctaaaagagctattacttagccgtaaaaag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attagtgaacagtctagaggtgggaggtacctaaaagagctattacttagccgtaaaaag 272
Query: 423 agggggaattccaacctatgttattaccacacagataagccttgaagccattctgtcatc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agggggaattccaacctatgttattaccacacagataagccttgaagccattctgtcatc 212
Query: 483 aaagtagac 491
|||||||||
Sbjct: 211 aaagtagac 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
