BAC Information

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BAC

Clone NameMSMg01-072N22
Chromosome5 (Build37)
Map Location 21,020,893 - 21,021,355
singlet/doubletsinglet
Overlap geneFbxl13
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670
Downstream geneLOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N22.T7 (MSMg01no072_n22.b1)MSMg01-072N22.TJ (MSMg01no072_n22.g1)
ACCAG296306AG296307
length726726
length of high quality
(start - end)
---465 (72 - 536)
definitionCHROMAT_FILE: MSMg01no072_n22.b1 PHD_FILE: MSMg01no072_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:45 2005CHROMAT_FILE: MSMg01no072_n22.g1 PHD_FILE: MSMg01no072_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCAATTCTTCTTGACGCCCTGCAGTCTAGA
CCATCTTGATGCTACCTGTTCCCATGCACACTTGGCGTAATACGGCAGCT
ACCTAGTCCCTGAGCAGAGAGTTGTAACCCCTCGCAGATCGACATGATTG
TCAACCCCCACACACCGGCCAGATGCACTGCAGAGCCCAAGGAGTCAGCT
AACACGTCCTCACTGACTTGAGGTACCTATATCTCGTATCCGACAGAGAA
CCACTGAGCAACTCTGGCTCTCCTGAATAGTCCACCGAGCGGCTACTTTT
CTGCATGTAAAGGAGGGCTGACTGCCTCTCGATGAATGAGTTCTTCATAA
AAGACTGGCCTTGTGTCTGGACCTCCAACTTTGGTGACCATTTTATTGCC
TTTGCTAATAACCTGGCATTGTGCTGAGAACCAAAGGCCTACATTTAGCT
GAAGACTGCTCTTATGTACCGAGGTGCGTGCGTGTGCTTTTGTGTGTATG
TGAGCGACTCCACCCTACTATTAAACTACACTGGTGAAGGCTATTGACGC
ATGAGTCTCCCGATTGCATAAATTATTACTAAACCTGAATGCCCTCCTTA
CCTTATAAATTACACGAAAACGGGTCTTAATTTCCGGCCCCAAGAAACCA
TCCAATTAACTGGCCCCCTATATACT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCGAGACCTTGCCTCAGAACAGAAAGTA
AAAGGAGGGATGGGCTGTAGCTTGATGGGCGGTAGACAGCTTGCTTGGCT
TGTACTAGACCCAGACTTTACTCCCTGACACTGAAAATCTGAAAGGAGGA
AGAAAGGCTAGGGAAGGAAAAGAAAGAAAGGGAGGAGGAAAGAAGGGAGG
AAGAGGAGGAGGAAGAAAGAAAGGAAACATAATCACCCATTTGCATTGTA
TAGTATAGAAATGATCTAGATAGAGAAGTGATTTTCTACTGGACCCCACA
TCCCAGGCACATGTATACAAACCCTGAATCCCAGGCACGTGTATATTTAG
ACCCTGCATCCCAGGCACATGTATATAGACCCCCATCCCAGGCACATGTA
TACAGACCCTGCATCCCAGGCACGTGTATTCAGCTCCCACATCCCAGGCA
CATGTATACAGATCTACATCCCAGGCACATGTATACAGATCTACATCCCA
GGCACATGTATACAGATCTACATCCCAGGTACATGAATACAGACCCTGTA
TTCCAAGCTCATGTATACAGCTCCCACATCCCAGGCACATGTATACAGAT
CTACATTCCAGGCACATGTATACTGACCCTGCATCCCAGGCACATGTATA
CAGCTCCCACTTCCCAGGTCCTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n22.g1 MSMg01no072_n22.g1 CHROMAT_FILE:
MSMg01no072_n22.g1 PHD_FILE: MSMg01no072_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:45 2005
         (465 letters)



>mm_chr5_21020831_21021693
          Length = 863

 Score =  640 bits (331), Expect = 0.0
 Identities = 434/469 (92%), Gaps = 10/469 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgagaccttgcctcagaacagaaagtaaaaggagggatgggctgtagcttgatgggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  agcgagaccttgcctcagaacagaaagtaaaaggagggatgggctgtagcttgatgggcg 122

                                                                       
Query: 61  gtagacagcttgcttggcttgtactagacccagactttactccctgacactgaaaatctg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 123 gtagacagcttgcttggcttgtaccagacccagactttactccctgacactgagaatctg 182

                                                                       
Query: 121 aaaggaggaagaaaggctagggaaggaaaagaaagaaagggaggaggaaagaagggagga 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 183 aaaggaggaaggaaggctagggaaggaaaagaaagaaagggaggaggaaagacgggagga 242

                                                                       
Query: 181 agaggaggaggaagaaagaaaggaaacataatcacccatttgcattgtatagtatagaaa 240
           |||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 243 agaggaggaggaagaaaggaaggaaccataatcacccatttgtattgtatagtatagaaa 302

                                                                       
Query: 241 tgatctagatagagaagtgattttctactggaccccacatcccaggcacatgtatacaaa 300
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct: 303 tgatctagatagagaagtgattttctactggaccccacatcccaagcacatgtatataga 362

                                                                       
Query: 301 ccctgaatcccaggcacgtgtatatttagaccctgcatcccaggcacatgtatatagac- 359
           |||  | |||||||||| ||||||   ||||||||||||||||||||||||||| || | 
Sbjct: 363 ccccca-tcccaggcacatgtatac--agaccctgcatcccaggcacatgtatacag-ct 418

                                                                       
Query: 360 ccc-catcccaggcacatgtatacagaccctgcatcccaggcacgtgtattcagctccca 418
           ||| ||||||||||||||||||||||| | | ||| |||||||| ||||| |||  ||| 
Sbjct: 419 cccacatcccaggcacatgtatacagatc-tacattccaggcacatgtatacaga-ccct 476

                                                            
Query: 419 -catcccaggcacatgtatacagatc-tacatcccaggcacatgtatac 465
            ||||||||||||||| ||||||| | | ||||||||||||||||||||
Sbjct: 477 gcatcccaggcacatgaatacagaccctgcatcccaggcacatgtatac 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 863
Length adjustment: 10
Effective length of query: 455
Effective length of database: 853
Effective search space:   388115
Effective search space used:   388115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)