ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGTATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTATAGCTTTAGGTCTGGCATGGTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTTATTAATGATTTTACATTT
CTTATCTCCTGGGTATAAACTCTAATCTGGGTTCTTTCAAAACTCAGGAA
AATAGTTAGTAGTAGACTCAAATTGATCCCAGAATTTCTTTTGATCTATG
ATGTTTCTAAAAAAAAAAGATAGGGATGACCATAAGGAGCATGTACAGTC
TGTGAGGGAAAATTTTCCCACACTAGGACACCAAGAGTTAAGTGACCAAA
GCCATAAAATGGTATGTGGTCAGAGGTAGGATAAACTCTTGTATTTCCCA
CCCTTCCTGTTACACTGAGCTTCGCAGCTCTTTTAACCCAAGATACTGAT
AAACATTCGAGACAGCTTTCTCTGCCCATGTATTCTGTGCACTTGATTTC
CTGTCTTTTTTACCAACAGCTGCGATAAGAAGAAACTTTGGAGCCAGTTT
GAGTTTTCTATTAGTTATTTCTCTGAATTTATAAGTACACTGAGGTTAAA
GTACAGAGTTAAGAGACACATAAGATTTTTTTTATTGTTTTCTAAACCAT
AAATATGCTCCCTTAATTATCTGCATTTAAAGGAAGAATTTGGGCTAGGA
AAGGAAATAGGAACCCTGTGGCCCAGTACAGCTT

Query= MSMg01no072_o05.g1 MSMg01no072_o05.g1 CHROMAT_FILE:
MSMg01no072_o05.g1 PHD_FILE: MSMg01no072_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:47 2005
         (609 letters)



>mm_chr5_47667191_47668199
          Length = 1009

 Score = 1141 bits (590), Expect = 0.0
 Identities = 605/610 (99%), Gaps = 2/610 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagttattaatgattttacatttcttatctcctgggtataaactctaatctgggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagttattaatgattttacatttcttatctcctgggtataaactctaatctgggttct 260

                                                                       
Query: 61  ttcaaaactcaggaaaatagttagtagtagactcaaattgatcccagaatttcttttgat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaaactcaggaaaatagttaatagtagactcaaattgatcccagaatttcttttgat 320

                                                                       
Query: 121 ctatgatgtttctaaaaaaaaaagatagggatgaccataaggagcatgtacagtctgtga 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatgatgtttctaaaaaaaaa-gatagggatgaccataaggagcatgtacagtctgtga 379

                                                                       
Query: 181 gggaaaattttcccacactaggacaccaagagttaagtgaccaaagccataaaatggtat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggaaaattttcccacagtaggacaccaagagttaagtgaccaaagccataaaatggtat 439

                                                                       
Query: 241 gtggtcagaggtaggataaactcttgtatttcccacccttcctgttacactgagcttcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 gtggtcagaggtaggataaactcttgtatttcccacccttcctgttacactgagctttgc 499

                                                                       
Query: 301 agctcttttaacccaagatactgataaacattcgagacagctttctctgcccatgtattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agctcttttaacccaagatactgataaacattcgagacagctttctctgcccatgtattc 559

                                                                       
Query: 361 tgtgcacttgatttcctgtctttttt-accaacagctgcgataagaagaaactttggagc 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgcacttgatttcctgtctttttttaccaacagctgcgataagaagaaactttggagc 619

                                                                       
Query: 420 cagtttgagttttctattagttatttctctgaatttataagtacactgaggttaaagtac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagtttgagttttctattagttatttctctgaatttataagtacactgaggttaaagtac 679

                                                                       
Query: 480 agagttaagagacacataagattttttttattgttttctaaaccataaatatgctccctt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agagttaagagacacataagattttttttattgttttctaaaccataaatatgctccctt 739

                                                                       
Query: 540 aattatctgcatttaaaggaagaatttgggctaggaaaggaaataggaaccctgtggccc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aattatctgcatttaaaggaagaatttgggctaggaaaggaaataggaaccctgtggccc 799

                     
Query: 600 agtacagctt 609
           ||||||||||
Sbjct: 800 agtacagctt 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)