BAC Information

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BAC

Clone NameMSMg01-072P02
Chromosome5 (Build37)
Map Location 15,195,629 - 15,196,254
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072P02.T7 (MSMg01no072_p02.b1)MSMg01-072P02.TJ (MSMg01no072_p02.g1)
ACCAG296361AG296362
length703701
length of high quality
(start - end)
535 (47 - 581)624 (78 - 701)
definitionCHROMAT_FILE: MSMg01no072_p02.b1 PHD_FILE: MSMg01no072_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:51 2005CHROMAT_FILE: MSMg01no072_p02.g1 PHD_FILE: MSMg01no072_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAAGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTATCTTTCTTCCACTGGATGGTTTTATCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGCGGATTCATTTCTGGGCCTTCAATTCTATTCCATTTG
CCTACTTGTCTGTCTCTATACCAGTACCATGCAGTCTTTACGCACATTGT
TCTGTAGTAAAGCTTCGGGTCTGGTTGGGTGATTCCGTCCGAAGTTCTTT
TGT
NNCCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGCTCATCACAAGCCGTCA
CTAACAGAATGTGGGTGGTGAGAACTAGTGCTTATTTGTTGATGAAGAAG
TAAGAACATACATACATCAGGGACCACATTTTGAATGTTTTTTGTGGTAC
AGCCTAGGTTTTGGGTGTTTATGAACAGTATACTTGAGGAAATCTTGGAA
TTGACAGCTTTATATGCTCTACATTAAAATATAACTTTTACATTTGCTAC
ATTTACATGACGATGAATAAACCCCAATGATTGCTTACTGCGTTATAACA
CTGTTGTTAGTGTTAACCCACGTGACTGTCAGGATGTACACAGAGATGGT
CGGAACTGAGCAACTTATCTTCAGCTATTTTTATAAACTGTTAAGACAAC
GGGCATGATAGTATTATATTAGGACTGTGATGCTTTTGAATGTTAAAAAA
TGCTTGTATGTATAAAATATAAAATTGCAAAAGAGCAGTAAGTCATTGAC
ATTGTTACATATTGAACTTTATTGCATTTAAAAAGTAAACTTTAATTTTG
TTAAGGAATTTAAACAAGAACCCAATAAAAAGAAGTAATATACTATGTTT
TTATACAAAACTTGTAATTTAAAGCATGTTATTTTGTAAATTTTACTAAG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_p02.g1 MSMg01no072_p02.g1 CHROMAT_FILE:
MSMg01no072_p02.g1 PHD_FILE: MSMg01no072_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:51 2005
         (624 letters)



>mm_chr5_15195429_15196454
          Length = 1026

 Score = 1042 bits (539), Expect = 0.0
 Identities = 604/627 (96%), Gaps = 4/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 767

                                                                       
Query: 61  gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgttttttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 766 gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 707

                                                                       
Query: 121 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaatcttggaattgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 706 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 647

                                                                       
Query: 181 ctttatatgctctacattaaaatataacttttacatttgctacatttacatgacgatgaa 240
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 646 ctttatatgctctacattaaaatataacttttatatttgttacatttacatgacgatgaa 587

                                                                       
Query: 241 taaaccccaatgattgcttactgcgttataacactgttgttagtgttaacccacgtgact 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 586 taaaccccaatgattgcttactgcgttataatactgttgttagtgttaacccacgtgact 527

                                                                       
Query: 301 gtcaggatgtacacagagatggtcggaactgagcaacttatcttcagctatttttataaa 360
           ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct: 526 gtcaggatgtacacagagatggtcgtaacttagcaacttatcttcagctatttttataga 467

                                                                       
Query: 361 ctgttaagacaacgggcatgatagtattatattaggactgtgatgcttttgaatgttaaa 420
           ||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 466 ctgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgttaaa 407

                                                                       
Query: 421 aaatgcttgtatgtataaaatataaaattgcaaaagagcagtaagtcattgacattgtta 480
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 406 aaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtta 347

                                                                       
Query: 481 catattgaactttattgcatttaaaaagtaaactttaattttgttaaggaatttaaacaa 540
            | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tagattaaactttatt-catttaaaaagtaaactttaattttgttaaggaatttaaacaa 288

                                                                       
Query: 541 ---gaacccaataaaaagaagtaatatactatgtttttatacaaaacttgtaatttaaag 597
              ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 287 caagaacccaataaaaagaaataatatactatctttttatacaaaacttgtaatttaaag 228

                                      
Query: 598 catgttattttgtaaattttactaagc 624
           |||||||||||||||||||||||||||
Sbjct: 227 catgttattttgtaaattttactaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1026
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1016
Effective search space:   623824
Effective search space used:   623824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)