BAC Information

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BAC

Clone NameMSMg01-073H03
Chromosome5 (Build37)
Map Location 3,360,083 - 3,360,420
singlet/doubletsinglet
Overlap geneCdk6
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726
Downstream gene5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073H03.T7 (MSMg01no073_h03.b1)MSMg01-073H03.TJ (MSMg01no073_h03.g1)
ACCAG296744AG296745
length692704
length of high quality
(start - end)
419 (64 - 482)422 (79 - 500)
definitionCHROMAT_FILE: MSMg01no073_h03.b1 PHD_FILE: MSMg01no073_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:30 2005CHROMAT_FILE: MSMg01no073_h03.g1 PHD_FILE: MSMg01no073_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGCCGCTATACGACTCCTATTCGAAGAGGATCCGCGGAATTCT
GTGTTTCCAAGATCAGGGCTTTTCTGTAGGGGTTTTGCTTTTGCTTATTA
GCAAGCAGTTAAAGGGTCAGACATTCTTCCTACTTAGGAAAGATGAAAAC
ATAAATAAATACATTTAATAGTACTCCTGGCTTTTTAAATATGGCCATTG
TGATGGTTTATGGCTGGTACTCATTGTCAGCTTGACAGAATTTAGAATCA
CCTGAGAGATGGGCCTCTGGATATGCCGGTGGGAGAATGCCTTGGTGACA
CTGGTTGATATGGGGAAGTCCCATCTAAACAGAGGCCTGGTTATTCTCAG
TGCATGGGATCCTGGACAGTAGGACGCACAGACAGTACGAGGAGCACTAG
CAAGCTCGCATTTGCTCCTCTGTTTTCTCATTATGGATACGGTGTGAACA
ACCTCTACAGTTCCTGTCGCCTTGACTTCAGCTCCAAGACGGACTGTATC
TTGAACTGCATTCGAGTTCTAACCAACTGATCTGCCCTTCCTTAAGCTGC
TTTTGTCGGGGTATTTTATCACAGCCACCGGAAAAGAAAGCGAGATGGCC
ACAGTTCCGCTATAATACCCCTAATTTCTTCCTTGTAAACTATTACCTAT
TCTCTTTAACAAACATATGTTTCCGACGGACCATAACATCCA
TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAATTTGCAATTTTTTATGC
ATATACAGCTCATTAAGAAAATGCTGTTCAATTAAGAAGACTGTTTTTGG
AAATTTAAGAATTTGTTCTAGATTGCCTGGACAAGACCTCTTAAGGCAAT
GCCATGCTAGACTTATATCCCAGGCAGATTATAAACCGTATACAAAAATA
ATTGGCCATATAACCTAATTTCTTTACATCATTAAAATAGTAATGGCTTA
AGATAATATTTTGGTATTTTTAGAAAATGTGCATGTCAAATTGTACAAAT
TTGTTCTCAGTGTCCTCAGTTTCTACCTGTTTCCACATAATGGCATTAAT
TCTTGAGGACTTACACTTAATCAATTGCTACTCTTATTTCTGATTAATAA
ATAAATAAAATGTGCACATGTGCCTATTTAATACTTTTCAGGCTTTCTAG
TCGTGAAAAGGATCCACTTATTGGCACATGGTATGATCCTGAAGAGAAAG
TTTAATATGGTAAAGATAGGGAGTGTTTCTGCCTTTTCCACACAATGCTA
CAGGAGTATCGCCAGCTTCCAAAATGATTCGTGTGACCGGCTGACTTGCG
AGTTCCTGAACGCCCTGATAGCGGAAAGCCATATTGAGCGCACAGAGAAC
GAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_h03.b1 MSMg01no073_h03.b1 CHROMAT_FILE:
MSMg01no073_h03.b1 PHD_FILE: MSMg01no073_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:30 2005
         (419 letters)



>mm_chr5_3360082_3360896
          Length = 815

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/342 (97%), Gaps = 4/342 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   agggcttttctgtaggggttttgcttttgcttattagcaagcagttaaagggtcagacat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agggcttttctgtaggggttttgcttttgcttattagcaagcagttaaagggtcagacat 280

                                                                       
Query: 62  tcttcctacttaggaaagatgaaaacataaataaatacatttaatagtactcctggcttt 121
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 279 tcttcctacttaggaaagatgaaaac----ataaatacatttaatagtactcctggcttt 224

                                                                       
Query: 122 ttaaatatggccattgtgatggtttatggctggtactcattgtcagcttgacagaattta 181
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttaaatatggccattgtgatggcttatggctggtactcattgtcagcttgacagaattta 164

                                                                       
Query: 182 gaatcacctgagagatgggcctctggatatgccggtgggagaatgccttggtgacactgg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaatcacctgagagatgggcctctggatatgccggtgggagaatgccttggtgacactgg 104

                                                                       
Query: 242 ttgatatggggaagtcccatctaaacagaggcctggttattctcagtgcatgggatcctg 301
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 103 ttgatatggggaagtcccatctaaacagaggcctggctattctcagtgcatgggatcctg 44

                                                     
Query: 302 gacagtaggacgcacagacagtacgaggagcactagcaagct 343
           ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 43  gacagtaggacgcacagacagtaggaggagcactagcaagct 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 815
Length adjustment: 9
Effective length of query: 410
Effective length of database: 806
Effective search space:   330460
Effective search space used:   330460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)