BAC Information

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BAC

Clone NameMSMg01-073M08
Chromosome5 (Build37)
Map Location 42,957,154 - 42,957,514
singlet/doubletsinglet
Overlap genenone
Upstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073M08.T7 (MSMg01no073_m08.b1)MSMg01-073M08.TJ (MSMg01no073_m08.g1)
ACCAG296988AG296989
length697701
length of high quality
(start - end)
365 (66 - 430)303 (76 - 378)
definitionCHROMAT_FILE: MSMg01no073_m08.b1 PHD_FILE: MSMg01no073_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:56 2005CHROMAT_FILE: MSMg01no073_m08.g1 PHD_FILE: MSMg01no073_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATATCATAATTTGCGGCGCTAAACGACTCCTATTCAGAGAGGACCGCGG
AATTCAGAACATACTGCAATCAACATTGCCTTTCTACATCTTTTCTATTT
GTTCTGGCATTTTCATACTGATTTTCACTCTGCTTATAGCCCATGCATTG
CTCAGGCTAGTTATAAACTCACAGGCTCAAGGTTTCCTCTTGCCACAGGC
GTCTAAGTACCTCATATTGCAAATGACTCACCCTTGTGTGTTTGCAATTT
TTCTATTTAAAAAACCTAACATTCAGGGTTTTTTTTTTAACATTTATTTT
ACTTTGAGATTATAATAAAATTATAATACCTTTCTGTTCCCTTTTCTCTA
TCCAAATCCTCCCATATAACTCTTCTTGTTCTTTTTCAGAGCTATAGACT
CTTTTTTTTTTCATTGATTTTTGTTATATGTAAATGCAAAGTCGAGGATT
CCAGTCTTGGTGGCCATATCTATAAATAAAATACTCTTGATCCAAAGACT
CAGGAAACATTGCAAAAGAGGAGTCCAACATATTATAAGAATCATATCTA
GAGGGTTGCTGCGAGATTTTGTCTCCCAATAATTTCAGAATATAATAAAA
ATCTCTCCAACTCTTACTGACCACGCCTCGAACTGATTGAGCATGATACC
AATTTTGTATGCCTCATTGTCCATTGGTCTTATCCCTTCTATAACCA
TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAGATGAGCTCAAGGTCTCTTCC
TGGAATGTAGTCCAACACAGGGAACTCACACACCCATTTCTCAGAGTGCT
CTAGAAGACTATGTCGACTGCTGTTTTATCAAGGAAAAAAGACACTGCGA
CTTAGACAACTCATAAAAGAAGACATTTAATTTGGAGCTTGAATACAGTT
TCAGAGGGTTAGTTTATTAGCATCATGGTAGGTGGTAGGGAGCATGGTAG
CCCTCCACCAGGCATGGTGTTGGAAAAGTAGCTGAGAGAAAGCTTTACAT
ATTGGTCCACAGGCAGAGAGAGAGAGAGGGAAGGAGGGTAAGAGAGAGAG
ACAGGCAGAGATTGATTCTCGTGTCTGTGAAAGCTTTTGAAATCCATAGT
CCCACACACCAGGGCCACATCTACCACAGTGTCACACCTCCTCCAACAAG
GTTATAACTCCTAATCCTTTCCAAATAATTTATCAACTGGGGACTAAACA
GAAATATATGACTGTATGTGCTAGAAAGTTCTCATTCAAAGTACCACAGT
GACCTCCCTAGGTTCGACTCTACCACAATAACTATCTTCCCCCCTATTCA
CTACTTAAATACGTCTAACCTCTACCTTCTTTTTATCCACCTTACCAACC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_m08.b1 MSMg01no073_m08.b1 CHROMAT_FILE:
MSMg01no073_m08.b1 PHD_FILE: MSMg01no073_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:56 2005
         (365 letters)



>mm_chr5_42957097_42957860
          Length = 764

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/366 (98%), Gaps = 6/366 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaatcaacattgcctttctacatcttttctatttgttctggcattttcatactgatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gcaatcaacattgcctttctacatcttttctatttgttctggcattttcatactgatttt 359

                                                                       
Query: 61  cactctgcttatagcccatgcattgctcaggctagttataaactcacaggctcaaggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cactctgcttatagcccatgcattgctcaggctagttataaactcacaggctcaaggttt 299

                                                                       
Query: 121 cctcttgccacaggcgtctaagtacctcatattgcaaatgactcacccttgtgtgtttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cctcttgccacaggcgtctaagtacctcatattgcaaatgactcacccttgtgtgtttgc 239

                                                                       
Query: 181 aatttttctatttaaaaaacctaacattcagggttttttttttaacatttattttacttt 240
           ||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 238 aatttttctattt-aaaaacctaacattcaggg----ttttttaacatttattttacttt 184

                                                                       
Query: 241 gagattataataaaattataatacctttctgttcccttttctctatccaaatcctcccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gagattataataaaattataatacctttctgttcccttttctctatccaaatcctcccat 124

                                                                       
Query: 301 ataactcttcttgttctttttcagagctatagactctt-ttttttttcattgatttttgt 359
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 123 ataactcttcttgttctttttcagagctatagactcttcttttttttcattgatttttgt 64

                 
Query: 360 tatatg 365
           ||||||
Sbjct: 63  tatatg 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space:   268780
Effective search space used:   268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)