Query= MSMg01no073_m24.b1 MSMg01no073_m24.b1 CHROMAT_FILE:
MSMg01no073_m24.b1 PHD_FILE: MSMg01no073_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:00 2005
(553 letters)
>mm_chr5_35301920_35302873
Length = 954
Score = 975 bits (504), Expect = 0.0
Identities = 531/550 (96%), Gaps = 17/550 (3%)
Strand = Plus / Minus
Query: 5 gaattctcttcaggaaaccctgacca-aactgaaattgaagccaggtgccagcatttagt 63
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 595 gaattctcttcaggaaaccctggccacaactgaaattgaagccaggtgccagcatttagt 536
Query: 64 aaaacgtctggccttgtttgactttttaaagagggaagagctaagaaaaagaaactcaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaaacgtctggccttgtttgactttttaaagagggaagagctaagaaaaagaaactcaga 476
Query: 124 gaataatgatagaagtcctgtagctatcaaaagaaagggacctcccaaacccctgcccca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaataatgatagaagtcctgtagctatcaaaagaaagggacctcccaaacccctgcccca 416
Query: 184 ctctgcaactcaagggacatgggctgttgtgttaagacaactcggcaagggaccccacta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctctgcaactcaagggacatgggctgttgtgttaagacaactcggcaagggaccccacta 356
Query: 244 tctctatccagtcttcaaatgagcaggcccgggtcctgggagagagtaacaggacaatgg 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 355 tctctatccagtcttcaaatgagcaggcccggatcctgggagagagtaacaggacaatgg 296
Query: 304 tgggttaactggtttaaaagttagtgggtcgttccccagagccaaagacagacacggagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgggttaactggtttaaaagttagtgggtcgttccccagagccaaagacagacacggagc 236
Query: 364 tgtgagctcaaaagttgagcagcagagaacatggaaagtgtcccacagaacccagcagag 423
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 235 tgtgagctcaaaagttgagcagcagaga----------------acagaacccagcagag 192
Query: 424 cggaaggacaagaatgtgccatggacaacacttctgagcagacacagagcacttcagcag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cggaaggacaagaatgtgccatggacaacacttctgagcagacacagagcacttcagcag 132
Query: 484 gccatacctgagtgatcacaaaccccatgcccagcccactaacaccacgggctggccagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gccatacctgagtgatcacaaaccccatgcccagcccactaacaccacgggctggccagt 72
Query: 544 cctcacagga 553
||||||||||
Sbjct: 71 cctcacagga 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_m24.g1 MSMg01no073_m24.g1 CHROMAT_FILE:
MSMg01no073_m24.g1 PHD_FILE: MSMg01no073_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:00 2005
(345 letters)
>mm_chr5_35218089_35218833
Length = 745
Score = 534 bits (276), Expect = e-156
Identities = 333/360 (92%), Gaps = 17/360 (4%)
Strand = Plus / Plus
Query: 1 tggagtggac-tgctatttggaatggcagccttaaatagtgggtgttgcccttcagtcaa 59
|||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 188 tggaatggacatgctatttggaattgcagccttaaatagtgggttttgcccttcagtcaa 247
Query: 60 gcattgtaatcatcgggctgctaagctct--gtgtcctgcaatgattgctagggacagaa 117
||| |||||||||| ||||||||| |||| ||||||| |||||||| ||||||||||||
Sbjct: 248 gcactgtaatcatctggctgctaaactctctgtgtccttcaatgatttctagggacagaa 307
Query: 118 gactga----------cacacaccaccagtctgatagagcaatatctggaataac--gtg 165
| |||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 gtctgaggtgcataaacacacaccaccagtctgatagagcaatatctggaataacttgtg 367
Query: 166 ggcgtttgagaaggaaaatccatcatagccttgttcaatattgtgtgtctaagtttgtgg 225
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 368 gg--tttgagaaggaaaatccatcatagctttgttcaatattgtgtgtctaagtttgtgg 425
Query: 226 ctatcccagacattccctcattgcatattcatgccttgtaggagacacagtctgtcctgc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctatcccagacattccctcattgcatattcatgccttgtaggagacacagtctgtcctgc 485
Query: 286 acgaagtcacttaacccccagaagtctggcgaagaggaggattctggctcggcagctcag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acgaagtcacttaacccccagaagtctggcgaagaggaggattctggctcggcagctcag 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
