BAC Information

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BAC

Clone NameMSMg01-073N03
Chromosome5 (Build37)
Map Location 82,280,626 - 82,281,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039506, LOC100039384, Lphn3
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073N03.T7 (MSMg01no073_n03.b1)MSMg01-073N03.TJ (MSMg01no073_n03.g1)
ACCAG297025AG297026
length702707
length of high quality
(start - end)
510 (35 - 544)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no073_n03.b1 PHD_FILE: MSMg01no073_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:00 2005CHROMAT_FILE: MSMg01no073_n03.g1 PHD_FILE: MSMg01no073_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCCGTAAACGACTCCTATTCCGAGAGGATCCGCGGAATTCCTT
TTTGATGCATTTCTCACTCTTATACAGTTCAAGGTCCCAGCCTAGAGAAT
GTTGCTACCCACAGTAGGCTGGGTCTTTGTATAATTATCTTTGTTAAAAT
AGTTTCCAATACATATATCCAAAAGCCAACCCAATGTAGATAATTCTTCA
CTGAGATCTTCTTGCCAGGTGACTCTTTGTAATATAAAACTGTCAATGAA
ATCTTCAAGGACCTTTATTCTCTGTTCTGAACTTGGCAGCCCTTGAGGCT
TTGAACAAACTCACCTCTCTAAATTTCTCAGAAAGAACTTGTAAAGGAAC
AGTTAAAAGCTCTTAAGGCCATTGCAAGTTTGCTTAAATTTGTTGGCAGG
CTTGCAACTTGGTCGTAGGTCTTGGTGGAGTCCCCCAAAACTCTTGCAGT
CCCAGGAGCCTTTCCCTGTTCCAGTACTTCTATTCTTTCTTGTTATGTGG
AAATTCTGCTTCTCACCAAGAGTCACAAATCTGTGGTCTTTGAGAAACCC
TGGTGGAGAGTGGGTGTGGGGGACATGTGTTCCCAGGAATTTCCTTCTGG
GAGAAGTTCCTTCAATTGGCCCCTTACACGATCTCCAACAACCCCTATGA
CACTCACGTCTGGACCTGAGTCCCTTACGCATAAGAAGGTAATATGCACT
AG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCACTAAACAGTCTGGTCCTGGGCTT
TTTTTAGTTGGGAAACTATTAATGACTGCTTCTATTTCTTTAGGGAATAT
GGGACTCTATAGAACATTAATCTGATCCAGATTTAACTTTGGTACCTGGC
ATCTGACTAGAAATTTCTCCATTTCATCCAGCTTTTCCAGTTTTGTTGAG
TATAGCCTTTTGTAGTAGAATCTGATGATGTTTTGGAATTCCAAAGGTTC
TGTTATTATGTCTCCCTTTTCATTTCTGATTTTGTTAATGAGGATATTGT
CCCTGTGCCCTCTAGTTAGTCCGGCTAACGGTATATCTATCTTGTTGATT
TTCTCAAAAAACCTGTTCCTGGTTTGGTTGCTTCTTTGTATAGTTCTTTT
TGTTTCCACTTGGTTGATTTCAGCCCTGAGCTTTAATATTTCCTGCCTTC
TACTCCTCTTGGGTGAATTTGATTTCTTTTGTTCTAGAGCTTTAGGTGTG
CTGTCAAGCTGCTAGTGTATTCTTTCTCTAGCTTCTTTTGACAGGACTCA
AAACTATGAGTTTTCCTCTTAGGACCGCTTTCACTGTGTCTCATAAGTTT
GGGCATGCTGTGGCTTCATTTTTACTAAACTCTAAAAAGCCTTTAATTTC
TTTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_n03.b1 MSMg01no073_n03.b1 CHROMAT_FILE:
MSMg01no073_n03.b1 PHD_FILE: MSMg01no073_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:00 2005
         (510 letters)



>mm_chr5_82280419_82281328
          Length = 910

 Score =  942 bits (487), Expect = 0.0
 Identities = 499/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcctttttgatgcatttctcactcttatacagttcaaggtcccagcctagagaatg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctttttgatgcatttctcactcttatacagttcaaggtcccagcctagagaatg 267

                                                                       
Query: 68  ttgctacccacagtaggctgggtctttgtataattatctttgttaaaatagtttccaata 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgctacccacagtaggctgggtctttgtataattatctttgttaaaatagtttccaata 327

                                                                       
Query: 128 catatatccaaaagccaacccaatgtagataattcttcactgagatcttcttgccaggtg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catatatccaaaagccaacccaatgtagataattcttcactgagatcttcttgccaggtg 387

                                                                       
Query: 188 actctttgtaatataaaactgtcaatgaaatcttcaaggacctttattctctgttctgaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actctttgtaatataaaactgtcaatgaaatcttcaaggacctttattctctgttctgaa 447

                                                                       
Query: 248 cttggcagcccttgaggctttgaacaaactcacctctctaaatttctcagaaagaacttg 307
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttggcagcccttgaggcgttgaacaaactcacctctctaaatttctcagaaagaacttg 507

                                                                       
Query: 308 taaaggaacagttaaaagctcttaaggccattgcaagtttgcttaaatttgttggcaggc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taaaggaacagttaaaagctcttaaggccattgcaagtttgcttaaatttgttggcaggc 567

                                                                       
Query: 368 ttgcaacttggtcgtaggtcttggtggagtcccccaaaactcttgcagtcccaggagcct 427
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 568 ttgcaacttggtcttaggtcttggtggagtcccccaaaactgttgcagtcccaggagcct 627

                                                                       
Query: 428 ttccctgttccagtacttctattctttcttgttatgtggaaattctgcttctcaccaaga 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttccctgttccagtacttctattctttcttgttatgtggaaattctgcttctcaccaaga 687

                                  
Query: 488 gtcacaaatctgtggtctttgag 510
           |||||||||||| ||||||||||
Sbjct: 688 gtcacaaatctgcggtctttgag 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)