BAC Information

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BAC

Clone NameMSMg01-074C21
Chromosome5 (Build37)
Map Location 14,031,302 - 14,031,594
singlet/doubletsinglet
Overlap geneSema3e
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream geneLOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074C21.T7 (MSMg01no074_c21.b1)MSMg01-074C21.TJ (MSMg01no074_c21.g1)
ACCAG297296AG297297
length712714
length of high quality
(start - end)
323 (34 - 356)293 (69 - 361)
definitionCHROMAT_FILE: MSMg01no074_c21.b1 PHD_FILE: MSMg01no074_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:28 2005CHROMAT_FILE: MSMg01no074_c21.g1 PHD_FILE: MSMg01no074_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCCTATAGGCAGAGGATCCGCGGAATTCATTTC
ACAGTCATATTCCCCATAGCTGGACTGATAGAAAAATGGAATGACTTTTT
GAAGAGACAGTTAGAACGCCAATTAGGTGGCATCAGCAAGGATGTCTGCA
TCAAGGTTCTTTAGAAGTCAGTATGTGGGTTGAATCAGCCTTCGATGTCT
GCTAGAGTTTCTCTTATAGCCATAATTCATGAGTCCAGGAATCAAGGAGT
GGCAAAAAAAAATATTTCCACTCACCCTTAATCTTAGTGACCCACAGGTA
AGTTTTTCCTTCCTGATTCGAAGAAGACAGTAAGATCTGTTGTTCTAGAA
GCTTTGCTTCTAGAGGACGGAAGTGTTCCTGCCATGAACCACAATGAACA
TTCCATTGAACTTGAAGCTCAAACTTCTGCCTGGTCATTTTGGGCTTCTA
AGGATTTTAAATTAACAGGTTAATGAAGGAATAACAATGTTAGCAGGGTA
ATAGATCCAGATTACCATGGCGAAATTATATTGCCTCTCCACAATGGATG
TAAAGATTGAGTCTGAATGCATAAGATTCCTAAGCACACCTCTTAGTAGT
ATCATGCCTGTGATTACAGCCAATCAGATACTACATCTGCCTAATCTAAG
CTACGATTTCAATAGTTCCCACCCGTTTTTGACTAACTCTATGTTCCCTT
CCTTTTATGACC
GATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAGTGTTTTGTAATGTCTGAGCCTAAAGTA
CTTGTTCTGTTTACCATTCCTGCGCTCCTAAACCTTTAGGCAGAGAGCAG
ACACGGCTGAGAATGTAAGTAAGGTACCGCCTATAGATGTGAAATTTCAT
TTTTCAGTTTAAAAAAAACTTCAAGTAAATCAGTGGATTCTCTGGTATTT
TTTTAGGGGCTATTGGGATTTAATCTGTAAGACTACAGGCTAGAGCACCC
AGGAAATAGGTGGGAAGATCTTAATCTACACAAGAGAACTTCACACACAA
CTGTTCTTGAATATTAATTGCCCTGACCACCAAAGGCTCATCACAGGAAG
AAGGCAAGTTCACAGTCCCGAAAGATATCTTGAAATCATTGGCCAGGAAA
GAAAACACCCTTACATAGATTTCCCCTTACAAAAATATTTTTTGTTAAGT
CCAACTCTACAAAACATATTATAATTCTTCACATTTTGTTCCATGTTTCT
TTCTTAAACTATTGGTTAATAAAACCATCATTGAATTCTCACCAGCCCTC
CTTAGGGAGGGAGTCTGCCATGCGATTTACCATCTACCCCCCGAGGCCTA
TGTCACCTCCGTGTTTATGATTCACGCCTATGACCCGTTTCTATTTATCA
CACCCAGAGTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_c21.g1 MSMg01no074_c21.g1 CHROMAT_FILE:
MSMg01no074_c21.g1 PHD_FILE: MSMg01no074_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:28 2005
         (293 letters)



>mm_chr5_14031102_14031794
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagtgttttgtaatgtctgagcctaaagtacttgttctgtttaccattcctgcgctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aagagtgttttgtaatgtctgagcctaaagtacttgttctgtttaccattcctgcgctcc 434

                                                                       
Query: 61  taaacctttaggcagagagcagacacggctgagaatgtaagtaaggtaccgcctatagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taaacctttaggcagagagcagacacggctgagaatgtaagtaaggtaccgcctatagat 374

                                                                       
Query: 121 gtgaaatttcatttttcagtttaaaaaaaacttcaagtaaatcagtggattctctggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtgaaatttcatttttcagtttaaaaaaaacttcaagtaaatcagtggattctctggtat 314

                                                                       
Query: 181 ttttttaggggctattgggatttaatctgtaagactacaggctagagcacccaggaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttttttaggggctattgggatttaatctgtaagactacaggctagagcacccaggaaata 254

                                                                
Query: 241 ggtgggaagatcttaatctacacaagagaacttcacacacaactgttcttgaa 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggtgggaagatcttaatctacacaagagaacttcacacacaactgttcttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)