Query= MSMg01no074_j19.b1 MSMg01no074_j19.b1 CHROMAT_FILE:
MSMg01no074_j19.b1 PHD_FILE: MSMg01no074_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:01 2005
(208 letters)
>mm_chr5_144101405_144102018
Length = 614
Score = 340 bits (176), Expect = 3e-98
Identities = 200/212 (94%), Gaps = 10/212 (4%)
Strand = Plus / Plus
Query: 5 gaattcttgattcccagttagtggaactgcttgggaaagattagggagtttgatcttgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcttgattcccagttagtggaactgcttgggaaagattagggagtttgaccttgat 264
Query: 65 ggaggcaggac-tccaggaatggtggggagagtctttagttactccgtgatcatgacagc 123
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaggcaggacatc-aggaatggcggggagagtctttagttactccgtgatcatgacagc 323
Query: 124 ccccaggatgtacgtttaatgccagtactcactgggggcaggggg-------gtgggagg 176
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 324 ccccaggatgtacgtttaatgccagtactcactgggggc-gggggtgggggagtgggagg 382
Query: 177 gaaggcaagcatggtgacacagacttgcaacc 208
||||||||||||||||||||||||||||||||
Sbjct: 383 gaaggcaagcatggtgacacagacttgcaacc 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 614
Length adjustment: 9
Effective length of query: 199
Effective length of database: 605
Effective search space: 120395
Effective search space used: 120395
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no074_j19.g1 MSMg01no074_j19.g1 CHROMAT_FILE:
MSMg01no074_j19.g1 PHD_FILE: MSMg01no074_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:02 2005
(330 letters)
>mm_chr5_144289669_144290398
Length = 730
Score = 617 bits (319), Expect = 0.0
Identities = 325/327 (99%)
Strand = Plus / Minus
Query: 4 gtctgatttcttttctttaaaaaaatattttagattttgtgtctgtgctcacgtgcacac 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gtctggtttcttttctttaaaaaaatattttagattttgtgtctgtgctcacgtgcacac 671
Query: 64 acgtgaatgaatgcaggtgtctcagggggccaaaggtgttggatcgctctggagctggaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 acgtgaatgaatgcaggtgtctcagggggccaaaggtgttggatcgctctggagctggaa 611
Query: 124 ttacaggtggctgtaagccatgtgattcaggtgctgggaacctaactccagtctactgga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttacaggtggctgtaagccatgtgattcaggtgctgggaacctaactccagtctactgga 551
Query: 184 agagcagcttgggctcttaagctccaggaggagggaacttgccaggcaagtgtgaggaac 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agagcagcttggcctcttaagctccaggaggagggaacttgccaggcaagtgtgaggaac 491
Query: 244 agagctccaatccagaaactagtatactaggagggtacggtgactcacctgtaactccgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agagctccaatccagaaactagtatactaggagggtacggtgactcacctgtaactccgg 431
Query: 304 aagataaagatgggatctccagggcaa 330
|||||||||||||||||||||||||||
Sbjct: 430 aagataaagatgggatctccagggcaa 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
