BAC Information

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BAC

Clone NameMSMg01-074K23
Chromosome5 (Build37)
Map Location 121,902,887 - 121,903,094
singlet/doubletsinglet
Overlap genenone
Upstream geneSdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29
Downstream geneTmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074K23.T7 (MSMg01no074_k23.b1)MSMg01-074K23.TJ (MSMg01no074_k23.g1)
ACCAG297681AG297682
length716719
length of high quality
(start - end)
51 (119 - 169)209 (69 - 277)
definitionCHROMAT_FILE: MSMg01no074_k23.b1 PHD_FILE: MSMg01no074_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:07 2005CHROMAT_FILE: MSMg01no074_k23.g1 PHD_FILE: MSMg01no074_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTATACGACTCCTATAGTGCGAGATCCGCGGATTCACCTAC
CCCTTGCATGTCCTTGTGCCTCCTGTTGGGAACTACTTCGACCTGCCTCG
GATCAGGCTGCCTCCACGAATCATGATAAAGCTCAGGGAGATTTCTGGCC
GTGCACGACCTCAGTTTAGACCAAGTATAAAGCATGTTCAGAGAGTGGGG
GTGCCAGCAAACCATGACTTTAAGTTTACCTGGGCGGTGGGAGCTCAGTG
CAAGGATGCTTTCACCTCTGGTGCAAGTCTCTGGTCTTGGCCCCCTTCAC
CATAAAAACATTAGTTCATTTATATGAAAATCTTGTATTTACTTGACGGA
CAGTTGTCGATCATTTATGTGATCCCACCATGCGGCCAGCGGGTCTCCCT
ATGCGGCCCCCCCCGTATACTCAAATATCCCGGAGTATTGGTGTGCTCCA
CTTTACATTTGCTGAATTGACAGTTTGGCCCTGCTGTCTCCCTCAAGTTT
CCACCGCCCTCCCTATGCCTGCTATACCTTGTTACGCTTTTACCTTTTCT
GACTCACCCATCCTGTCTTCGTCCTCCCCCTCCACTCCTTTTTTCTCGTT
TCCTCTGCCTCCCCCTCCTTACTTGTTTACCCCTTTGCTACCTTCCCTTA
CTCCGACCTTCTTTTTTTCCCCTGCCGTTTTTTCTGCCCTTCCCCCTGTT
CTTTTCCCCGTTTCGC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCGAGCCTTTATCCCTGTGCTGAAGACAAT
CAGAACGTACCATATTCTCACTCCTTGAAAACGGGTCAGCCCAGCCTGGT
CTTGTCACCCCCCTGCCTCGTGCTGAAATTAGGCCTGTGCCACCCACCAA
CACTTGACCAAAAAGCACGAAGGCGAATAGGTCTTTTCCCCAACCTCCTG
CGACATGGGAGGCCACATTGCCTAAGTGTCCCCGCGGGCCTGACCAGAGC
TGTAACCGGGGGTCTACAAGGTTAGGACAGCTACTACCAGTGATAAACAG
CTGACTAATCTATTTATGGCCCCGCCCTCTCTTGAGACCGCCCGACCGTC
CAGCGTACGCAATGAACGCACGCCACCAAGACTTATTCTGAAGCGAGAGA
GAACGCAACGACGTTAACGCTCGAACTGGCGCCTCCTGTGAGAATGCAGC
GCAACACGGCCTACCTAAGTGTCCCCAAACCGCCGTCGTTGTGCCTCTTC
TTATCCTTCCTGTCCTGTTAACCCTCCCGATTGCCCCTCCGAACTTAACT
TATCGCCATCCCCTCTTTTTTTTCCGCCCTATTCCTCAAAGCATCCTACA
CCTTTTCCCCGTACCTTATTTCCATTTACCCCTCAGCCTCAAACCCCCTA
CCCCCCACCGTCCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_k23.g1 MSMg01no074_k23.g1 CHROMAT_FILE:
MSMg01no074_k23.g1 PHD_FILE: MSMg01no074_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:07 2005
         (209 letters)



>mm_chr5_121902687_121903294
          Length = 608

 Score =  358 bits (185), Expect = e-103
 Identities = 203/209 (97%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcgagcctttatccctgtgctgaagacaatcagaacgtaccatattctcactccttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||
Sbjct: 408 cttcgagcctttatccctgtgctgaagacaatcagaacgtaccataagct-agtccttga 350

                                                                       
Query: 61  aaacgggtcagcccagcctggtcttgtcacccccctgcctcgtgctgaaattaggcctgt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaacgggacagcccagcctggtcttgtcacccccctgcctcgtgctgaaattaggcctgt 290

                                                                       
Query: 121 gccacccaccaacacttgaccaaaaagcacgaaggcgaataggtcttttccccaacctcc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 289 gccacccaccaacacttgaccaaaaagcacgaaggcgaataggccttttccccaacctcc 230

                                        
Query: 181 tgcgacatgggaggccacattgcctaagt 209
           |||||||||||||||||||||||||||||
Sbjct: 229 tgcgacatgggaggccacattgcctaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 608
Length adjustment: 9
Effective length of query: 200
Effective length of database: 599
Effective search space:   119800
Effective search space used:   119800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)