BAC Information

Click to search

BAC

Clone NameMSMg01-074O09
Chromosome5 (Build37)
Map Location 135,461,797 - 135,622,062
singlet/doubletdoublet
Overlap geneCldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl
Upstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4
Downstream geneTbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074O09.T7 (MSMg01no074_o09.b1)MSMg01-074O09.TJ (MSMg01no074_o09.g1)
ACCAG297843AG297844
length694737
length of high quality
(start - end)
253 (126 - 378)163 (76 - 238)
definitionCHROMAT_FILE: MSMg01no074_o09.b1 PHD_FILE: MSMg01no074_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:25 2005CHROMAT_FILE: MSMg01no074_o09.g1 PHD_FILE: MSMg01no074_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,621,810 - 135,622,062)(135,461,797 - 135,461,959)
sequence
CATAATTTGCGGCGCTAAACGACTCCTATTCGGAGAGATCCGCGGAATTC
ACCATTATACAATATCTTGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAG
CACTGACTGCTCTTCCCGAGGTCCTGAGTACAAATCTCAGCAACCACATG
GTGGCTCACAACCATCTGTAATTGGGTTTCATGCCCTCTTCTGGTGTATC
TGAAGACAGCGACAGTGTACTTATACATAAATAAATCTTTTTTTAAAAGA
CTTATCTTGAAAGATAACATTTGGATTAGATGTGCTTCATTAGACAGGAA
TGTTCCTAAAACTGTTATGCCCTGCAGGTTGCCTGGTCCCCACATCCACA
TTATGTCTATAAGCTCACAATGGGCCAGTCTGTACTAATCCCACCACACT
CCAGCTGCCTGCCCTCACAGATGGACCCTCTAAGGACACCAGCAATGACA
GAAGCAGACTGACATATACACGTTGGCTACCTCTGGTGAGTAACTCCGTC
CACTCAGAGCAGAGAGTACTCACTTCCTTTCCTTTTGCTCTTTTCTGCCA
CATGGTATCTATTCTGCTCCGCACACCGCTTTTGTTCAGTGCTGGCCTCT
GCCATCCACCGATATATCTGTCTTGCTCTTTGCTTGCTACGCCTGCTACT
TTTCCTTCCTTTTTTCTCCCTGCCCCTTGTCTTTCCCTCTTCCC
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATGCTTAAGGAGCTTGGGGAGGT
TGGGAAGGGAGGGAGCTTACACGACCCCGCCCTCCTTCGATACACACTCT
CCCACCCCACCCCCACCCCCGCCACACACAACACATACACTTCAGCATTG
AGGTTCTAGCCAAATCCTTTCTCCTATGGTGAAGGGGGTTGGTGAGGACG
TATCGCATTGTACGGGACTCACTTTATTGTCCCCTGCTCTCGAAGAGTGA
GCTCCACCCTCCCCCTCTATTTTTCTAGTTAAGTCCTATCCATCCCATCC
CAGATTTTTTTTTTTTCCCCCCCCCCCCCCTTAATAGCCTTAGGCCGCTT
GTTGACTATTTTACCCCCCCACAAATAAAAAAAAAAACACCCCGGCGTGG
GGCGGTCCCGCCTTTTCGCCACATAGCTGCTCCATCTTTTCCCATTTACC
CCCGCCATTACCCACAATATCTTACGCCTTGCCCCGCATCTTTTTCCCCG
CATCTATTGCTATACCCCCTGTTTTATACCCCCCTCTCTTCCTACTCCGC
TTCTTAATTCCTCCCCCCCCCCTCATCTTGTACTCCCCCCCTTTCCCTCA
TATCCAATCCTTACCTTTTTGCCCATTCCTTTTATTCATTTTTCCCCTCA
CCACTCAAACCGATATACCCCACCCTAACCTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_o09.b1 MSMg01no074_o09.b1 CHROMAT_FILE:
MSMg01no074_o09.b1 PHD_FILE: MSMg01no074_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:25 2005
         (253 letters)



>mm_chr5_135621499_135622151
          Length = 653

 Score =  443 bits (229), Expect = e-129
 Identities = 247/253 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtacaaatctcagcaaccacatggtggctcacaaccatctgtaattgggtttcatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagtacaaatctcagcaaccacatggtggctcacaaccatctgtaattgggtttcatgcc 505

                                                                       
Query: 61  ctcttctggtgtatctgaagacagcgacagtgtacttatacataaataaatcttttttta 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcttctggtgtatctgaagacagcaacagtgtacttatacataaataaatcttttttta 445

                                                                       
Query: 121 aaagacttatcttgaaagataacatttggattagatgtgcttcattagacaggaatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagacttatcttgaaagataacatttggattagatgtgcttcattagacaggaatgttc 385

                                                                       
Query: 181 ctaaaactgttatgccctgcaggttgcctggtccccacatccacattatgtctataagct 240
           ||||||||| |||||||||||||||||||||||||||||||||||  | | |||||||||
Sbjct: 384 ctaaaactggtatgccctgcaggttgcctggtccccacatccacagcaagcctataagct 325

                        
Query: 241 cacaatgggccag 253
           |||||||||||||
Sbjct: 324 cacaatgggccag 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_o09.g1 MSMg01no074_o09.g1 CHROMAT_FILE:
MSMg01no074_o09.g1 PHD_FILE: MSMg01no074_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:25 2005
         (163 letters)



>mm_chr5_135461597_135462159
          Length = 563

 Score =  308 bits (159), Expect = 2e-88
 Identities = 162/163 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgcttaaggagcttggggaggttgggaagggagggagcttacacgaccccgccctcc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ttatgcttaaggagcttggggaggttgggaagggagggagcttagacgaccccgccctcc 260

                                                                       
Query: 61  ttcgatacacactctcccaccccacccccacccccgccacacacaacacatacacttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcgatacacactctcccaccccacccccacccccgccacacacaacacatacacttcag 320

                                                      
Query: 121 cattgaggttctagccaaatcctttctcctatggtgaaggggg 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattgaggttctagccaaatcctttctcctatggtgaaggggg 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)