BAC Information

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BAC

Clone NameMSMg01-074O12
Chromosome5 (Build37)
Map Location 75,224,181 - 75,224,411
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
Downstream geneEG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074O12.T7 (MSMg01no074_o12.b1)MSMg01-074O12.TJ (MSMg01no074_o12.g1)
ACCAG297849AG297850
length723720
length of high quality
(start - end)
54 (65 - 118)231 (123 - 353)
definitionCHROMAT_FILE: MSMg01no074_o12.b1 PHD_FILE: MSMg01no074_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:26 2005CHROMAT_FILE: MSMg01no074_o12.g1 PHD_FILE: MSMg01no074_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATCTGTGCCCAGAGGGAGCTCCCTTTTAAATGGAACCGCTTTTGCTT
ATTCTGTGAGGATGAGCACCTATTCAAATTCTCTGGACTAAGGATGCCTG
TCGTCTAATTTTCTCTTCAGATATGGTATGAGGACCGGACAATAGGGGTC
AGAGGCAAAATCAGCAGGGCATAATAGTTTGTGCAAATGCCTTGAGGGCA
CTGCCAGCTTGGGTCCAACTTCCTGGAACTCTGCCTCAGCACATCAGATG
TTGCTTAGAACAGGCTATTTGTGTGCTCGCCTGCTGTAGTACAACTCAGT
TACTTTTATATCCCAGACGAAGTCTCTGTTGCTATTGGTCATACTGTGTG
TTAAGTCCCCTCCACCCTGGTCTTCAGTATCTTCTGCAGGTCAAACTCCA
CATTAAGGGTCTCTTCTTCCTTTGCATGTCTACTGAAGCTGAGAGTTCTA
AGGACTTTATCTACTTTGTTTTCTCCACGGAGCACAGCGGTACTTTCTGA
CCTGTTTTCTCTCCTGCCCTTGTTTTTTGGTATTTTAAATGGGAGAAGGC
ACGGATCTTCTCATCTTCTCGCCTTTCCCAGCCAGATGTTATCCTTCCCC
TCTTTTCGCTCTGCTTGGCCTGCTCTTTTTTACCCCTCTATTATTTCCCC
CCACCCCTTCTCTGTTTTCTCTG
GAATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAATTCTTTTACTGCCCCAGGGCTGCCCT
AGACACTTTGCCTTTCCCCATGATCATTTATCCTCAGACGAGCTGTCTTG
ATTAATTTATGATCTGAGACATTATTAATTTATTGCTCAGCTTTGTGTAG
TGACTTGTCTTAATAAGGCCAGCAATTAATCACAGCTCCCTGCTCTGAGT
CCCAATTTAACTTCCTTTTATGGTTTTACACATATGCATGAATTTGAAAC
AATAGAACAACCTAATATGATATATGAAACCTCAAATTGGCCTTTTATAC
GTTTTTTTTTTCCCCCACCCCCCCCTTAAAAGGTAATCTTTTCATCTAAT
TGGATATGCCCGCGAATAAAAATAATGATTTCGCGTGCACTGGGGCTGGT
TGGCAACATATCCTAGGAGAGGTTGGCTATCCTAGAACTGATACTTAGCC
CCTGAGTATGATGATCCTTGACCTAGCTCCAGCCAACAAAAAATTGAAAA
GTCTATAACTCCTCTAAAGTCAACGACCCCATTGTCATCTCAGTCTCAAT
TGTTAACACGTTAACCGACAAGTCCTTCCTGGCCCATTCCCCGCTCTTTG
TTTAACAAGTCTGCTGCACAAGCAATCTTTGATAGGACTGTTCACTCCAT
TCCTTCCATGGTATTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_o12.g1 MSMg01no074_o12.g1 CHROMAT_FILE:
MSMg01no074_o12.g1 PHD_FILE: MSMg01no074_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:26 2005
         (231 letters)



>mm_chr5_75223981_75224611
          Length = 631

 Score =  416 bits (215), Expect = e-121
 Identities = 227/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatttatcctcagacgagctgtcttgattaatttatgatctgagacattattaattta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atcatttatcctcagacgagctgtcttgattaatttatgatctgagacgttattaattta 260

                                                                       
Query: 61  ttgctcagctttgtgtagtgacttgtcttaataaggccagcaattaatcacagctccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctcagctttgtgtagtgacttgtcttaataaggccagcaattaatcacagctccctg 320

                                                                       
Query: 121 ctctgagtcccaatttaacttccttttatggttttacacatatgcatgaatttgaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgagtcccaatttaacttccttttatggttttacacatatgcatgaatttgaaacaa 380

                                                              
Query: 181 tagaacaacctaatatgatatatgaaacctcaaattggccttttatacgtt 231
           ||||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct: 381 tagaacaacctaaaaggatatatgaaacctcaaattggtcttttatacgtt 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)