Query= MSMg01no075_b05.b1 MSMg01no075_b05.b1 CHROMAT_FILE:
MSMg01no075_b05.b1 PHD_FILE: MSMg01no075_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:38 2005
(621 letters)
>mm_chr5_56059791_56060812
Length = 1022
Score = 1102 bits (570), Expect = 0.0
Identities = 607/620 (97%), Gaps = 6/620 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtaaatttctccctatgtatctaactggcacctcaaaaacaaaacaatttttc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gaattctgtaaatttctacctatgtatctaactggcacctcaaaaacaaaacaatttttc 946
Query: 65 ccatggctagagagaaagaacactgcttcaacgcacttcttgtccttgcagaggacccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ccatggctagagagaaagaacactgcttcaacgcacttcttgtccttgcagaggacccag 886
Query: 125 gtttaattccatgcactcactcacaacttattataattctagttcttatctggcatgaga 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 885 gtttaattccatgcactcactcacaacttattataattctagttcctatctggcatgaga 826
Query: 185 taagcacatgttgtagatacacacatgcaagctaaacagtagttcacataaaataaaata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 taagcacatgttgtagatacacacatgcaagctaaacagtagttcacataaaataaaata 766
Query: 245 atcacttaaaaatatttccaaaactgacttcattgatattctcaatgggtttgtgccata 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 atcacttaaaaataattccaaaactgacttcattgatattctcaatgggtttgtgccata 706
Query: 305 gcctgcctcaccttagtgaatggcaagtatattttcctatgtgattcacatatagctctt 364
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 705 gcctgcctcaccttagtgtatggcaagtatattttcctatgtgattcatatatagctctt 646
Query: 365 caaaatgat-cagtagtatattaaatagtatggtcccatatcatctttagaggtatccct 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 caaaatgattcagtagtatattaaatagtatggtcccatatcatctttagaggtatccct 586
Query: 424 tttaaatttgagattgtattcatattcatattgactaaagaaaggtcttttcaatggagt 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tttaaagttgagattgtattcatattcatattgactaaagaaaggtcttttcaatggagt 526
Query: 484 ctcaatgggtatatcagccacacttaaagtatgtttcaagctgtagacagccaatataaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctcaatgggtatatcagccacacttaaagtatgtttcaagctgtagacagccaatataaa 466
Query: 544 aaaaaaatcaatagcatttttgaaattttt-gtcagatattgctttgtttngg-gacctt 601
||||| |||||||||||| |||||||||| ||||||||||||||||||| || ||||||
Sbjct: 465 aaaaa--tcaatagcatttatgaaattttttgtcagatattgctttgttt-ggtgacctt 409
Query: 602 ttatctcactgatcttttgc 621
||||||||||||||||||||
Sbjct: 408 ttatctcactgatcttttgc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_b05.g1 MSMg01no075_b05.g1 CHROMAT_FILE:
MSMg01no075_b05.g1 PHD_FILE: MSMg01no075_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:39 2005
(236 letters)
>mm_chr5_55896442_55897077
Length = 636
Score = 441 bits (228), Expect = e-128
Identities = 234/236 (99%)
Strand = Plus / Plus
Query: 1 atacatgaaatacttatttttaaaaagataaaatctatgagctgcagtgactaggtgaaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atacatgaaatacttatttttaaaaagataaaatctatgagctgcaatgactaggtgaaa 260
Query: 61 ttgttagtgaagccatactctgtggttatgaggggactacctgcaggaagctctctaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttagtgaagccatactctgtggttatgaggggactacctgcaggaagctctctaggt 320
Query: 121 cttcgctaatgcgagtgcactgagaatatcatgttcaagcaggtgaacagttaaaagatt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgctaatgcgagtgcactgagaatatcatgttcaagcaggtgaacagttaaaagatt 380
Query: 181 aatgtttgtactagaatctgtgtgtgatgtggacattgaagagttgtagttgtttg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtttgtactagaatctgtgtgtgatgtggacattgaagagttgtagttgtttg 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
