BAC Information

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BAC

Clone NameMSMg01-075B16
Chromosome5 (Build37)
Map Location 118,124,329 - 118,124,558
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
Downstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075B16.T7 (MSMg01no075_b16.b1)MSMg01-075B16.TJ (MSMg01no075_b16.g1)
ACCAG298001AG298002
length692833
length of high quality
(start - end)
264 (80 - 343)74 (137 - 210)
definitionCHROMAT_FILE: MSMg01no075_b16.b1 PHD_FILE: MSMg01no075_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:41 2005CHROMAT_FILE: MSMg01no075_b16.g1 PHD_FILE: MSMg01no075_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGGNGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCATCTCCGGTTGGATGATACCTGTGACTTTTAC
CAATGTGCTCATCTATTCAACAGTAACAACAGCTGCTACAGCTGTTACAG
TGTCCTGGCATGCTTTGTCCAAACCATATACCTTTGTCAGCTACAACAGA
AACAAGACCCAGGCCCATGATATACCTATATATGTGCACTGAAGCTATCA
GTTGAAACTCATCCTGTGAAGAAAGCCTCCCAGGGAGCATCAGTTAAGGA
GAGAGGGTGGACATTTATTTGCATGTGTTTTTCAAGTATTACCAAAAAAA
CGGAACATATTGAATGGGGTCTTAAAGGACTGCCTGACGGACAGGAACAG
GCAATATGCTGGATCCATAACGGACTTACCACTCAGCACAGAAGTTTGTC
TGATTGGAAGGAATGACAGAGAGTAAGGACAGCGACGAGTGACCTCTCAG
ACACGCGGCCCTGATCACGAAGAGGTCGGAGGTCATTTCTTACTGATATG
GTCATGAACATGTCATCTGTCCCCTGCTAATACCCGCTTGAACGGCTATT
ATCATCGGCCCAAAACCCTCTGTCCTGTATTGCCCGGTTATCACCTCCCT
ACTTCACATCACACGCTATAACACCCTCTCCCTCTCCTTTCA
NNTTTTTTTTTNNTTTTTTTTTTTTNTTTNNTTCCTTCTTCTCCCTTCTG
AATNNNNCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGACCTTTCTTCTGC
ATCATGTAGCCTCTGTTCTTTCATTCACACAATGGGGCTTACTTATTCCT
CTTACACTGTAACTTGACCCCACTACATGAGGTGATGCCGTGCCCCCAGC
CACTACTCCCTCCCCCCACCTTTCCCCCCCCTCCTCCCTCACTAACTCCC
CCCTTTACCTCCAATCCCTCCACCACCTCACCCTTTCCTCCATCCAACTA
TCTCTACCTTAACTATCCTTCCCCTTAGCACTTCCTTTTTTCCCCTTCTA
CCCCCCCACTTTTCCCTATCTTCCTTTTTTTTTTTCCACCCCCCCCACTT
GCCCCATCGCAGTCCACCCCTTTCCCCCCTCCTCTCCACCTCTCAACCCA
CCATAATCACTTCTCCTCCCCGCCCTCGCCCGTTTTCGCACCCCACCCTC
CATCCCCTCTCCCCACCTACTCCCCAAATACTCTCCTCTCCCTTCCCGCA
CCCCCTTCTTTTCCTTCTTTACCTATCCTCTCCCTTTCCCTCCCACCCAT
CCCCCCCTCTTTCTCTCCCCTATCCTTCTTCCACACCCCCCTTTCTTCTT
TCCTACTCCCCATTTCCCCCCATTCCAACCCCGTATATTTACCCCCCCCT
CCTCCCTATTTGTAATCCATCCCCCCACCCTCTTTATCCCTCTTTCCCCT
TTCCCCCCTCTAGTCCCCCTTATACCTCCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_b16.b1 MSMg01no075_b16.b1 CHROMAT_FILE:
MSMg01no075_b16.b1 PHD_FILE: MSMg01no075_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:41 2005
         (264 letters)



>mm_chr5_118124129_118124792
          Length = 664

 Score =  371 bits (192), Expect = e-107
 Identities = 229/262 (87%), Gaps = 32/262 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgatacctgtgacttttaccaatgtgctcatctattcaacagtaacaacagctgctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgatacctgtgacttttaccaatgtgctcatctattcaacagtaacaacagctgctac 260

                                                                       
Query: 61  agctgttacagtgtcctggcatgctttgtccaaaccatatacctttgtcagctacaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgttacagtgtcctggcatgctttgtccaaaccatatacctttgtcagctacaacag 320

                                                                       
Query: 121 aaacaagacccaggcccatgatatacctatatatgtgcactgaagctatcagttgaaact 180
           ||||||||||||||||||||                                ||||||||
Sbjct: 321 aaacaagacccaggcccatg--------------------------------ttgaaact 348

                                                                       
Query: 181 catcctgtgaagaaagcctcccagggagcatcagttaaggagagagggtggacatttatt 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 catcctgtgaagaaagtctcccagggagcatcagttaaggagagagggtggacatttatt 408

                                 
Query: 241 tgcatgtgtttttcaagtatta 262
           ||||||||||||||||||||||
Sbjct: 409 tgcatgtgtttttcaagtatta 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)