BAC Information

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BAC

Clone NameMSMg01-075M05
Chromosome5 (Build37)
Map Location 43,423,061 - 43,423,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075M05.T7 (MSMg01no075_m05.b1)MSMg01-075M05.TJ (MSMg01no075_m05.g1)
ACCAG298502AG298503
length700700
length of high quality
(start - end)
538 (51 - 588)522 (80 - 601)
definitionCHROMAT_FILE: MSMg01no075_m05.b1 PHD_FILE: MSMg01no075_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:31 2005CHROMAT_FILE: MSMg01no075_m05.g1 PHD_FILE: MSMg01no075_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATAAGGAACAGACCTGTGCTTGTGTGGGGGTCACTTAATC
GCCTTCTAAGTGTTTTGATTCTCTTTTGCAAAGGGACTGATTTTTCTTTT
TCTTTTTCAGACTTAGTGGAGTGCCAAAAGAGCAAAGAGCAGTCAGTGAG
TGGAAAGCAGGTAACACAAAATAAACAGAGAGAGTTCAGCAAAGCACATG
ACCAACTCCAGCCTCCCAGTAGTGCACGGGGGCATTTTAGCTTAATGCTG
TAGCTGCCTCAGGGCAGTATTTGCTACTCATTACCCTGCCTTTTCCTTCT
GGTAGGAAGCCAAAGCAGAATTTGGAGCCACGTGATGGTACAGCCTCACT
TTGTGCTGTTCTTTAGAGGTAGAGAGATCTTGACATGCATAGTATGCTTG
GCTAGAATTTTAGAAAGTTCCTCTTTAATCAGAAGGCTTTGAGGGAATAT
GACTGCTCTGTGCAAACAACAGCCATTTTACTCCTCTGTACGTTGCTGCC
TTTAGGGATAGTTACCTCACTCAAACTAGAACTGAATCTCTGTGCTGAGG
AACATGACTGATGTTGAATGTATGGGTGGCCCAGTTATGAATCTTCCTTA
AAGATGAAGCTCAACCTCTGACTGTGTTTATAAACAGTACTGCAGCGAAA

NNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCATGAAATGCTGTTCTC
TAGACAAGGTATGGCTTGCACACATGAACTCTCAGCAGCCATAGGTATCA
GCACATTTCAGTAAGAAATCCAGCCTAAATGATGAGGCCTCTCAAGGCCC
TACCCCAAGCTGAGAAACTATAGGCAGTTGGTAACTATAGGGAGGAGTCA
CTTTTCATTTGGGGGGTACCCACTTGTAGGTTGACCATACTTAAGTGGAT
GACTCCATACCTATGTGAACATGGGTAGCACCAAATGGTGTCAGTGTATT
ACAATAGAAAGCACATGAAATTAGGAGTGAGATGTATTGGAGATCAAAAA
GTAGAAAACCCTGAGAGAATATTGGAGAGAGGATATGAGGAATGAATACA
ATCAAGATTCATGTGTTTAGATGTATAACATTTTCCAAAAAATATGATTC
AAAAAGAAGAAAGTAGAAGCCACAGAGCTACTGAGGGAGACCCCGTTTCA
GGCTCTAGACAGTCAAGCACCTTCCCTGCCATAGGAGAGGTGTCCACTCC
GCTCAGAAGGGTTTTGCTGTAGCAACTGGTGGAGCCACCTTGTTTCCCAG
ATTCTGCCGAGACTAGTCTGTGCAAGTGAGAGTGTGGACTACCGAAGCTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_m05.b1 MSMg01no075_m05.b1 CHROMAT_FILE:
MSMg01no075_m05.b1 PHD_FILE: MSMg01no075_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:31 2005
         (538 letters)



>mm_chr5_43422857_43423794
          Length = 938

 Score =  932 bits (482), Expect = 0.0
 Identities = 521/534 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaggaacagacctgtgcttgtgtgggggtcacttaatcgccttctaagtgtt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaattcataaggaacagaactgtgcttgtgtgggggtcacttaatcgccttctaagtgtt 679

                                                                       
Query: 65  ttgattctcttttgcaaagggactgatttttctttttctttttcagacttagtggagtgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgattctcttttgcaaagggactgatttttctttttctttttcagacttagtggagtgc 619

                                                                       
Query: 125 caaaagagcaaagagcagtcagtgagtggaaagcaggtaacacaaaataaacagagagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caaaagagcaaagagcagtcagtgagtggaaagcaggtaacacaaaataaacagagagag 559

                                                                       
Query: 185 ttcagcaaagcacatgaccaactccagcctcccagtagtgcacgggggcattttagctta 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 558 ttcagcaaagcacatgaccaactccagcctcccagtagtgcatgggggcattttagcttc 499

                                                                       
Query: 245 atgctgtagctgcctcagggcagtatttgctactcattaccctgccttttccttctggta 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 atgctgtagctgcctcagggcagtatttgctactcattaccctgccttttccctctggta 439

                                                                       
Query: 305 ggaagccaaagcagaatttggagccacgtgatggtacagcctcactttgtgctgttcttt 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 ggaagccaaagcagaatttggagccacgcgatggtacagcctcactttgtgctgttcttt 379

                                                                       
Query: 365 agaggtagagagatcttgacatgcatagtatgcttggctagaattttagaaagttcctct 424
           |||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||| |||
Sbjct: 378 agaggtagagagatcttgacattcttagtacgcttggctagagttttagaaagttcgtct 319

                                                                       
Query: 425 ttaatcagaaggctttgagggaatatgactgctctgtgcaaacaacagccattttactcc 484
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaatcagaaggctttgagggactatgactgctctgtgcaaacaacagccattttactcc 259

                                                                 
Query: 485 tctgtacgttgctgcctttagggatagttacctcactcaaactagaactgaatc 538
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 258 tctgtacgttgctgcctttagggatagttacctcagtcaaactggaactgaatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)