BAC Information

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BAC

Clone NameMSMg01-075O13
Chromosome5 (Build37)
Map Location 34,593,888 - 34,675,177
singlet/doubletdoublet
Overlap geneZfyve28, EG433874
Upstream geneCtbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4
Downstream geneA830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075O13.T7 (MSMg01no075_o13.b1)MSMg01-075O13.TJ (MSMg01no075_o13.g1)
ACCAG298612AG298613
length692690
length of high quality
(start - end)		627 (54 - 680)471 (84 - 554)
definitionCHROMAT_FILE: MSMg01no075_o13.b1 PHD_FILE: MSMg01no075_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:42 2005CHROMAT_FILE: MSMg01no075_o13.g1 PHD_FILE: MSMg01no075_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,593,888 - 34,594,435)(34,674,861 - 34,675,177)
sequence
NNNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGAAAGTAGACATACAAGAGACACTATATGTGTTTT
TTTCTGGCCCCTGTGGTCCATTATATTGGGCGAAGAGCAACCCTCTACTA
CACAAAAGGTGCATAGGCATACAGGCAGGGAGTAGGGGAAGATAATTCCT
CCTCAGCTGAACACAGCAGAAACCAAACCAAAAGATCATACAATCGCACT
CAATAGTAAATAAAGATAGCTCCAGCACAGCCCCTGCCAAACACACCAAC
TGAGGGTGGACCAGAAAGAGATAGCCACCAAAATATGCCACATCAGAAAG
ATTTGAGAATAAAGAACTCTGGCTAGTGGTCCCTGTGGAACCTTATCCGT
ACCTGGGAGATTCACCATACATTCTGAGAGCCAGAATCCTACGTTTCCTG
AAAATCTTCTATAGCAAGTGCTGCCCAATGGGATATTCTCTGAGATGGTG
CTTAGGCCTCCCTGCAGGCAAGGCTATGCCTCTCTGGCTTCTCAGCAATC
TGGTAAGTTAAGGTTTTAGATCTAGCTTAGACACCCCAATAAGAATCACC
CCCTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCT
TCCGAAGGTCCAGAGTTCANATCCCAGCAACCACATGGTGGN

NNNNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAATATTTGAAATT
TTTTTAAAAGATTATTTATTTTATGTGTGAGTACATTGTTGCTGTCTTCA
GACATGACATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTG
CTGGGAATTGAACTCAGGGCCTCTGGAAGAGCAGTCAGTGCTCTTAACCA
CTGAGCCATCTCTCCAGCCCCGGAATATTTGAAATTTTACACATTATTTT
ATTTTACTTTGTTGAGGCTTTGTTGGATATCTCATGTAGTCTGGAACTCA
ATTTGTAGACCATGCTGGCCTCAAACTTCTGCCTGCCTTTACCTCCCAAG
TGCTGGGATTAGAGAAATGTGCCACATCACCTGACTTATTTACTTACTGA
GTGCATATACATGTACCACAGAGTACTTGTAGCAGTCAGAGGGAGGCTTG
TCTAAGTCGGCTCTCTCACTGTGTGGGTCCTGTATGGTCTGAGGATATGG
AAGCTTATAAGAAGTGTTTGTGGCCCAGGAAGGTGTTCTGGGGTTGGTAA
ATACAAGCTCTGAGGGTAAAGGATGTGAGAGAAACAAACAAACCTGGACT
GTGATAGGAAAGTGTTACGATAATAAGGGAGGCATGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_o13.b1 MSMg01no075_o13.b1 CHROMAT_FILE:
MSMg01no075_o13.b1 PHD_FILE: MSMg01no075_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:42 2005
         (627 letters)



>mm_chr5_34593684_34594710
          Length = 1027

 Score = 1052 bits (544), Expect = 0.0
 Identities = 547/548 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaagtagacatacaagagacactatatgtgtttttttctggcccctgtggt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaaggagacatacaagagacactatatgtgtttttttctggcccctgtggt 264

                                                                       
Query: 65  ccattatattgggcgaagagcaaccctctactacacaaaaggtgcataggcatacaggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccattatattgggcgaagagcaaccctctactacacaaaaggtgcataggcatacaggca 324

                                                                       
Query: 125 gggagtaggggaagataattcctcctcagctgaacacagcagaaaccaaaccaaaagatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggagtaggggaagataattcctcctcagctgaacacagcagaaaccaaaccaaaagatc 384

                                                                       
Query: 185 atacaatcgcactcaatagtaaataaagatagctccagcacagcccctgccaaacacacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atacaatcgcactcaatagtaaataaagatagctccagcacagcccctgccaaacacacc 444

                                                                       
Query: 245 aactgagggtggaccagaaagagatagccaccaaaatatgccacatcagaaagatttgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aactgagggtggaccagaaagagatagccaccaaaatatgccacatcagaaagatttgag 504

                                                                       
Query: 305 aataaagaactctggctagtggtccctgtggaaccttatccgtacctgggagattcacca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataaagaactctggctagtggtccctgtggaaccttatccgtacctgggagattcacca 564

                                                                       
Query: 365 tacattctgagagccagaatcctacgtttcctgaaaatcttctatagcaagtgctgccca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacattctgagagccagaatcctacgtttcctgaaaatcttctatagcaagtgctgccca 624

                                                                       
Query: 425 atgggatattctctgagatggtgcttaggcctccctgcaggcaaggctatgcctctctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgggatattctctgagatggtgcttaggcctccctgcaggcaaggctatgcctctctgg 684

                                                                       
Query: 485 cttctcagcaatctggtaagttaaggttttagatctagcttagacaccccaataagaatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttctcagcaatctggtaagttaaggttttagatctagcttagacaccccaataagaatc 744

                   
Query: 545 accccctg 552
           ||||||||
Sbjct: 745 accccctg 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_o13.g1 MSMg01no075_o13.g1 CHROMAT_FILE:
MSMg01no075_o13.g1 PHD_FILE: MSMg01no075_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:42 2005
         (471 letters)



>mm_chr5_34674307_34675177
          Length = 871

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 155 gtgctcttaaccactgagccatctctccagccccggaatatttgaaattttacacattat 214
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 871 gtgctcttaaccactgagccatctctccagccctggaatatttgaaattttacacattat 812

                                                                       
Query: 215 tttattttactttgttgaggctttgttggatatctcatgtagtctggaactcaatttgta 274
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 811 tttattttactttgttgaggctttgttggagatttcatgtagtctggaactcaatttgta 752

                                                                       
Query: 275 gaccatgctggcctcaaacttctgcctgcctttacctcccaagtgctgggattagagaaa 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaccatgctggcctcaaacttctgcctgcctttacctcccaagtgctgggattagagaaa 692

                                                                       
Query: 335 tgtgccacatcacctgacttatttacttactgagtgcatatacatgtaccacagagtact 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtgccacatcacctgacttatttacttactgagtgcatatacatgtaccacagagtact 632

                                                                       
Query: 395 tgtagcagtcagagggaggcttgtctaagtcggctctctcactgtgtgggtcctgtatgg 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtagcagtcagagggaggcttgtctaagtcggctctctcactgtgtgggtcctgtatgg 572

                            
Query: 455 tctgaggatatggaagc 471
           |||||||||||||||||
Sbjct: 571 tctgaggatatggaagc 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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