BAC Information

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BAC

Clone NameMSMg01-076D22
Chromosome5 (Build37)
Map Location 3,990,470 - 3,990,743
singlet/doubletsinglet
Overlap geneAkap9
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf
Downstream geneCyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076D22.T7 (MSMg01no076_d22.b1)MSMg01-076D22.TJ (MSMg01no076_d22.g1)
ACCAG298868AG298869
length714714
length of high quality
(start - end)
347 (68 - 414)278 (67 - 344)
definitionCHROMAT_FILE: MSMg01no076_d22.b1 PHD_FILE: MSMg01no076_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:09 2005CHROMAT_FILE: MSMg01no076_d22.g1 PHD_FILE: MSMg01no076_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATCTCTCGAGCCCATTTTTAATGGGGTTATTTGATTTTCTGGAG
TCCACCTTCTTGAGTTCTTTTTATATATTGGATATGAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTAT
TATTGACAGCGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGATTC
CATTTGTCAATTCTTGCTCTTACAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTTCCCCTGTGCCCTTATCTTCGAGTTTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTGGTTTTATGTGCAGTTCCTTGATCCACTTAC
ATTTGATCTTATTACCCCGACACTAGGAATGGATCAATTCATATTCTTCT
ACATGATAACAACCATTTGTGCCAGCCCCATTTGTTGCCACTGCTGTCTT
CTTTCCACAGGATGGCTTTAGCTCCCTTGTCGAAGATCTAGTGACCCCAG
CTGCGCGTCTTCATTTCTGGTTCCTCCATTCTATTCCATCGTTCTACATG
CCTGTCACTATACACGTCCCATGTAGCTTTTAATCACCACCGCTCTGTAC
TCCAGCCTTTAGGTCACGCATGCTGATTCCCCCTTAGGCTTCTTTACTCT
TCTTCACATACCTT
TAGAGTGTTAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGGATAGAGAAGCTGGGTAGCACCCTGACGCTA
ATAGGACTGTGTTCCACGCTGAAGCCTGAACAGAAGGGCTGAAATGTCAC
AACAAACCTGGTGATGAGGAAGAAGGTGTTATGGACCAGGAGTACAAGGA
CTAATGCAGGCAGAGCCTTCAACAGCAGCAGCCAAAGCAGCAAAGAGAAG
CAAGAAAAGGCCAAGCCCACTGGACTGTGACCATCTGCCCTGCGTAGATT
TGTACCCTTAGCCTGAGATGACTCAGAAAGAACAGGAGACGGTTTGGCAG
GCCAAGGCACTTCAAGACTGAAGACCTGAGTGTGTTGATCCCTATAAGAA
ACATAGTAGAAGGACGAGACTCATTTGCACAGGTTGAAGCTTTTGACCTT
TACTTGCCTACAGTGACACACACATGCACACACAATCTCAGAAGATAAGC
ATTACCAACCAATGACCCATTTTTACAAAGTTCTCATAATGGTTAAATAC
TTTGATGCTAAGAATGCTTATGACTTTAGAAAATGATTGTGTTTGTCACA
CTCACAGAAATGTATTCTTGCTTGTGCGAAATTGGACTATGCACGTAAAT
ACCATAATGGACAATAATGAGGTAGAAATGCTCTCACAGCTTGTACTGCA
AATCACGAGAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_d22.g1 MSMg01no076_d22.g1 CHROMAT_FILE:
MSMg01no076_d22.g1 PHD_FILE: MSMg01no076_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:09 2005
         (278 letters)



>mm_chr5_3990269_3990945
          Length = 677

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%), Gaps = 1/275 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tggatagagaagctgggtagcaccctgacgctaataggactgtgttccacgctgaagcct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 202 tggatagagaagctgggtagcaccctgacgctaataggactgtgttcca-gctgaagcct 260

                                                                       
Query: 62  gaacagaagggctgaaatgtcacaacaaacctggtgatgaggaagaaggtgttatggacc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacagaagggctgaaatgtcacaacaaacctggtgatgaggaagaaggtgttatggacc 320

                                                                       
Query: 122 aggagtacaaggactaatgcaggcagagccttcaacagcagcagccaaagcagcaaagag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagtacaaggactaatgcaggcagagccttcaacagcagcagccaaagcagcaaagag 380

                                                                       
Query: 182 aagcaagaaaaggccaagcccactggactgtgaccatctgccctgcgtagatttgtaccc 241
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aagcaagaaaaggccaagcccactggactgtgaccatctgccctgcctagatttgtaccc 440

                                              
Query: 242 ttagcctgagatgactcagaaagaacaggagacgg 276
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagcctgagatgactcagaaagaacaggagacgg 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space:   179692
Effective search space used:   179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)