BAC Information

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BAC

Clone NameMSMg01-078C01
Chromosome5 (Build37)
Map Location 60,015,207 - 60,015,493
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C01.T7 (MSMg01no078_c01.b1)MSMg01-078C01.TJ (MSMg01no078_c01.g1)
ACCAG299537AG299538
length705707
length of high quality
(start - end)
544 (46 - 589)456 (78 - 533)
definitionCHROMAT_FILE: MSMg01no078_c01.b1 PHD_FILE: MSMg01no078_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:21 2005CHROMAT_FILE: MSMg01no078_c01.g1 PHD_FILE: MSMg01no078_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGCTGACGAATACCAAATGGCTGAGAGGCACCTGGAAAAATGT
TCAATATCCTTAAACTTCAGGGAAATGTAAATTAAAACAACCATGAGATT
CTACCTCAAACCAGTCACAATGGCTGAGACCAAAAATTCAGGTGTCAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTGCATTACTAGTGG
TTTTGCAAGCTGGTACAACCACTCTGGAAATCAGGCTGGAGCTTCCTCAG
AAAGTTGGATATAGTTACTACTGGAAGATCCAGCAATAGTATTCTTGGGC
ATATACCCAGAAAATGTTCCAAGTTGTAATAAGGACACATGCTCCACTAT
GTTCATAGCAGCCATTATTTATAATAGCCAGAAACTGGAAAGAACCTAGA
TGTCTCTCATCAGAAGAATGGATACAGAACATATGGTAATTTACAAAATG
AATTACTACTCACTAACTAAAAACAATGATTTTATGAATTTCTTGGTCAA
GTGGATGGATCTGGAGGATATCATCCTGAATGACGTAACCCATTCACAAA
AGAACACACATGGTATGTACTCACTCATCAGTGGATATTAGACCTGAAAC
TTAGAAAACATGATATAATTTGCAAAACACATGATACTCCAGAAGAAGGA
AGATC
CTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTACTACACAGTTGAACAT
GCTATGGATCATTTTTTTTTTTTTTTTTTTNTGGTTTTTTCGAGACAGGG
TTTCTCTGTATAGCCCTGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTC
TGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCGTGG
ATCATTTTTATATATGGTCTCATCTTTTCTCAAATTTAACTGTTATCAAC
AAGCCACACCTTTTACTGTTGTTATCTCATGGTTTAAATTCCCACGAATG
AAAACCATAGATTTTGAAGGAGTACATACATCCCAGTCTTATAATTATTT
TATCCATGCCTAGTACTTAATGATTGACTATGTAGATTTATAATTTTGTT
TTTGGTTCTGCAGAATGTTATAATAAATGTCATATTTTTATATATAATTG
CTTTGAAATGTTTATATCCCTCAGGCTCATTAATTTCGTCTTACCTCTGC
AAAATATTATGCATTGCATAACCAAGGGAGCTTAAGATGGTATTGTATAA
TATCTTCTTAGAAAAATGGCTAACAAAATAATGTATGGTTACTTTGTTTT
TGCCGTTGTTTGCCATTTGAAATATTGAACGATACTATCCTAAATCTTAC
AGGTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c01.g1 MSMg01no078_c01.g1 CHROMAT_FILE:
MSMg01no078_c01.g1 PHD_FILE: MSMg01no078_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:21 2005
         (456 letters)



>mm_chr5_60014837_60015693
          Length = 857

 Score =  485 bits (251), Expect = e-141
 Identities = 278/287 (96%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 171 tggatcatttttatatatggtctcatcttttctcaaatttaactgttatcaacaagccac 230
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 657 tggatcatttttatatatggtctcatcttttctcaaatttaactgttatcaacaagtcac 598

                                                                       
Query: 231 accttttactgttgttatctcatggtttaaattcccacgaatgaaaaccatagattttga 290
           ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 597 accttttactgttgttacctcatggtttaaattcccacaaatgaaaaccataaattttga 538

                                                                       
Query: 291 aggagtacatacatcccagtcttataattattttatccatgcctagtacttaatgattga 350
           |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 537 aggagtacatacatccaagtcctataattattttatccatgcctaatacttaatgattga 478

                                                                       
Query: 351 ctatgtagatttataattttgtttttggttctgcagaatgttataataaatgtcatattt 410
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 477 ctatgtagatttataattttgtttttggttctgcagaatgttataataaacgtcatattt 418

                                                          
Query: 411 ttatatataattgctttg-aaatgtttatatccctcaggctcattaa 456
           |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 417 ttatatataattgctttgaaaatgtttatatccctcaggctcattaa 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space:   377762
Effective search space used:   377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)