BAC Information

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BAC

Clone NameMSMg01-078E24
Chromosome5 (Build37)
Map Location 41,919,591 - 41,919,850
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522
Downstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078E24.T7 (MSMg01no078_e24.b1)MSMg01-078E24.TJ (MSMg01no078_e24.g1)
ACCAG299678AG299679
length684685
length of high quality
(start - end)
260 (369 - 628)73 (169 - 241)
definitionCHROMAT_FILE: MSMg01no078_e24.b1 PHD_FILE: MSMg01no078_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:36 2005CHROMAT_FILE: MSMg01no078_e24.g1 PHD_FILE: MSMg01no078_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCCCTCTAAATTGCGGCGCTAAACGACTCACATCGGAGCGGAGCCGCG
GAATCAGCTTTTTCACAACAAGCTCACAAACCAGGTACACAGTGCCTGCC
CTAACAGAATCACACCTGACCCAAGGCAGCTCGGGTGGAGGTGTTCAGTG
TAGCACAAAAATGCCTTTGTAAGCCCCCAAATGCCATTCAGATATAATTG
GAAATGATTTCTGCCCAATGCCTACAGTCTTCTGCACCCAATAAGTCACT
GTATTCACAGTGGTCTCTTTATTAAACTCCTGTCCCTCCGTGTATTAGCA
TGTAACTCGATATATTTNATCATTTGACTTCTTTGTCTGTAGGTAAATAG
CTCAGAGGGGATTTTTAAGCTATTTCCCCAACCCCAAGAATAGTAGTCAC
CATCACGTGAGATTTGGATTGGCGTTTACCCAGAGTATTTACTGGTAACA
GTACCCAGTATCTCACAGCACCCTAGTGGCAGGGACCTGGGAATGCTTGT
ATTACTTCCAACATGTCTCTTCTACTCCTCCAAATGGAATAATGGAGGAA
AAAGAGGGGTTGGCATCACCCTCCTCTGAACGGGAACGGGGGCCCTGTTC
AGTTCCTGTATGTTTTTTTTTTCTACTTGGATAAGATATCCTTCTTGTAC
TATCATTCTTAGNGTCTCACAATAATTCGTGTTT
ACGATGAAGGGGGAGGCCGGGNGGCGCCCTTTCGGACTCGCAGGNGAANN
ANACATTTCCAGCACCGGGGGGNGANGAANANANACNCAAACNNAGGGGA
CACAAGGAAAGCAGCCCCAAGGAAAGNNCAAAGCACNAAGGGCCNCCACA
AGGAAANNAGGGAAACCCCACACAAGGAANNNAACAGCACACCGGAAAAC
ANAACAAAAAGAAGCACACACCCAAGAGAAGNAGACAGCANAAGAAATTC
AAANAAAGGCCGAGACCAACAAGAACAGCACAAAGAANCAGCAAAACCAA
GAGCGGAANCTCTGTGTATTTTTCAANGAAANAGACAAACCNNCAGNCAA
ACTAACTGACCCCCCCCCCGAGAAAGAACAGCCAAANNANCAAAACCAGA
AACGAAGAGAGGGACACAACAACAGACAACAAGGACGCCCAAAGAAGGAC
GGGGNCNACAAAAAACCCAAACCCCAGGAAGNGGGAAACCCCCAACGAAA
CGGACGACCCCCNCGCCAGANACCANNGGCCAAAGCNGAACCAAGAAAAG
GGAAACCACGCAAAGAGACCCAAAAACCCCACGGAAGCAGAAACAGCCAG
CACAAGCNNCCCACCACCACCACCACCCCAGGCAAAAAAAAAAAAACAAT
TTTTTTGTTTCAGATGCTTCCAGTTCAAAAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_e24.b1 MSMg01no078_e24.b1 CHROMAT_FILE:
MSMg01no078_e24.b1 PHD_FILE: MSMg01no078_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:36 2005
         (260 letters)



>mm_chr5_41919391_41920050
          Length = 660

 Score =  464 bits (240), Expect = e-135
 Identities = 255/260 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctatttccccaaccccaagaatagtagtcaccatcacgtgagatttggattggcgttta 60
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||
Sbjct: 460 gctatttccccaaccccaagaatagtagtctccatcatgtgagatttggattgtcgttta 401

                                                                       
Query: 61  cccagagtatttactggtaacagtacccagtatctcacagcaccctagtggcagggacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cccagagtatttactggtaacagtacccagtatctcacagcaccctagtggcagggacct 341

                                                                       
Query: 121 gggaatgcttgtattacttccaacatgtctcttctactcctccaaatggaataatggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gggaatgcttgtattacttccaacatgtctcttctactcctccaaatggaataatggagg 281

                                                                       
Query: 181 aaaaagaggggttggcatcaccctcctctgaacgggaacgggggccctgttcagttcctg 240
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaaagagaggttggcatcaccttcctctgaacgggaacgggggccctgttcagttcctg 221

                               
Query: 241 tatgttttttttttctactt 260
           ||||||||||||||||||||
Sbjct: 220 tatgttttttttttctactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)