Query= MSMg01no078_f10.b1 MSMg01no078_f10.b1 CHROMAT_FILE:
MSMg01no078_f10.b1 PHD_FILE: MSMg01no078_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:38 2005
(274 letters)
>mm_chr5_107242273_107242942
Length = 670
Score = 441 bits (228), Expect = e-128
Identities = 260/272 (95%), Gaps = 4/272 (1%)
Strand = Plus / Minus
Query: 1 agttaaaatatgctatctgaaatttttttctagtttctgaaaaactaaaactctgagcat 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 468 agttaaaatatgctatctgaaa-ttttttctagtttctgaaaaactaaaactctgagcat 410
Query: 61 tgagcagccctccccccgccccccaaagcaggtccttccatgatggacttccttttgtac 120
||||||||||||||| | | | ||||||||||||||||||||||||||||||| ||||
Sbjct: 409 tgagcagccctcccc---ctctctaaagcaggtccttccatgatggacttcctttcgtac 353
Query: 121 cttggaatcacccctccctcaagatgtccagagcaggtgagctgcctcttaaatggtcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttggaatcacccctccctcaagatgtccagagcaggtgagctgcctcttaaatggtcgt 293
Query: 181 atccatctccattactgccctaattgtataagccgacagcattactgccccatggcgcag 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 292 atccatctccattactgccctaattgtataagccgacagcaggactgccccatggcgtag 233
Query: 241 ttaaggggaaggttttcattgtaaatgtgagg 272
||||||||||||||||||||||| ||||||||
Sbjct: 232 ttaaggggaaggttttcattgtagatgtgagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 670
Length adjustment: 9
Effective length of query: 265
Effective length of database: 661
Effective search space: 175165
Effective search space used: 175165
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no078_f10.g1 MSMg01no078_f10.g1 CHROMAT_FILE:
MSMg01no078_f10.g1 PHD_FILE: MSMg01no078_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:38 2005
(395 letters)
>mm_chr5_107128555_107129345
Length = 791
Score = 698 bits (361), Expect = 0.0
Identities = 385/395 (97%), Gaps = 4/395 (1%)
Strand = Plus / Plus
Query: 1 agatttaaaccataacaaagcacaagaagacaaatgaaaggacggaaagaagaaaaaaaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 201 agatttaaaccataacaaagcacaagaaaacaaatgaaaggacggaaag----aaaaaaa 256
Query: 61 aaaaaagatgaagcaagacagtaataccgcagtagcaaaggaagtactggtaacagcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaaaaagatgaagcaagacagtaataccgcagtagcaaaggaagtactggtaacagcttc 316
Query: 121 gtgttatgacaactggccccaaatttcagtggtataacaacagtaagcttgttcgtacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgttatgacaactggccccaaatttcagtggtataacaacagtaagcttgttcgtacac 376
Query: 181 tactcctctgcagtaagttggaaagggagaggaggccacggagcataatcagggcataat 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 tactcctctgcagtaagttggagagggagaggaggccacggagcataatcagggcataat 436
Query: 241 aaccaatattattatgccctgttattcagggcataatatatacgtcagacatggacagaa 300
|| ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 437 aatcaacattattatgccctgttattcagtgcataatatatacatcagacatggacagaa 496
Query: 301 aacacttctcagtttcagtagtcagccatccaggcacgtgaccctactcactgaaagaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aacacttctcagtttcagtagtcagccatccaggcacgtgaccctactcactgaaagaca 556
Query: 361 gactccagaatgtagtttattctattccactgagg 395
|||||||||||||||||||||||||||||||||||
Sbjct: 557 gactccagaatgtagtttattctattccactgagg 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 791
Length adjustment: 9
Effective length of query: 386
Effective length of database: 782
Effective search space: 301852
Effective search space used: 301852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
