NTTTCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCAAGCTTGCTCCGATTAGGTGTCCTGGAATTTATTCAGAATATGCT
CTGATAAGTGGAAAACTGGACAATCCCAAGGCACTTCTTAGCTTCATCTG
AACCATATATGGATCAGTAATGGCCATATTCTCCTGTATATTTGAGGGAG
AAATAACATACCTGACAAATGTCTGAGAACATATGGCTTCCGGTGGCTAC
AAACTGAACCACTTCACATGACCAGACTGATATCGGGAGAAAATCATCAA
CTTATTCAAGATATCCAATCTTCAGTAAATGAAATCACAGAGTAGCTAGT
GTTTTACAAGGAGCATTCCAGTGTAGTCTATGATTAATTCTACAACAGAA
CTACAGTTAATGTGGAAGGATTTATGTATTTGTTAATATCTGCCAATAAC
ATATTTCTAAGCCAGGAAGAAGTAACATTTCAGGAATCCCTCTATTTCCA
GAGTTGTTACAGGCTTACACATTTCATCTCCGTTTCTCCTCAATGTTTTC
ACATTTACGCGTAAGCCACTCGCTTTTGCATTATCCACCATCAATATTTA
ACATTCTAAAATCCCATCACACAGAAACACCCAATTTAAATTTTATGTCT
GGCATCCGGTATAATAGTTTTC

NCAGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGGTTAGCATGGACCGTGTGTTAGTCTC
AGGAAACCTGCTATGACAATAGGTTGAAACCTACTGGTTCTTTGTAATAG
CTTTCTGCTGCTCTTCCCCTGCTGTGTGCAGGCAGGCAGGCTGGCTGGTC
CCTTGCCAAGCACAAGACATTTATAAGATTCTAGTCAAGATCATTGAGGC
TCCAACTTAAAATGACACATGAGTGAGCTGTACAGACAACTGAGGCATAA
GGAGGAGAGCTGTTGAGGCAGGTCACAAAGAAATATTTATATCTATCCCC
TAAATATAGGGAGGTGGAACACAAAATAATGAGCTAAACAAAAAATTTAT
TTGTACCTATCCCCTAAATATTGGGAAAGTTTGCTACAGAGAAAAAGCTA
ACTTTTGCTGAAAGTTAGCACCTAGAAGTTGTAGAAGTTAAGTACTTCCA
TGAAAACAAACTTACTAAAATATGCAACTTTTGCTTTTGAGCTAGAAAGT
AGGTGGGAGCTATAAAAGCAGTAGAGCTTTGAAAAATGGCCAGTTGACAG
TTGAAGCGTAAAAAATAATACCGAAGTGTTATATATGACCCAGAAAGATG
AGGAAATGTCCATTTAAGTAA

Query= MSMg01no078_j02.b1 MSMg01no078_j02.b1 CHROMAT_FILE:
MSMg01no078_j02.b1 PHD_FILE: MSMg01no078_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:56 2005
         (536 letters)



>mm_chr5_49011846_49012781
          Length = 936

 Score =  949 bits (491), Expect = 0.0
 Identities = 521/531 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaagcttgctccgattaggtgtcctggaatttattcagaatatgctctgataagt 65
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaattcaagcttgctgtgattaggtgtcctggaatttattcagaatatgctctgataagt 677

                                                                       
Query: 66  ggaaaactggacaatcccaaggcacttcttagcttcatctgaaccatatatggatcagta 125
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggaaaattggacaatcccaaggcacttcttagcttcatctgaaccatatatggatcagta 617

                                                                       
Query: 126 atggccatattctcctgtatatttgagggagaaataacatacctgacaaatgtctgagaa 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 616 atggccatattctcctgtatatttgagggagaaataacatacctgacaaatgactgagaa 557

                                                                       
Query: 186 catatggcttccggtggctacaaactgaaccacttcacatgaccagactgatatcgggag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catatggcttccggtggctacaaactgaaccacttcacatgaccagactgatatcgggag 497

                                                                       
Query: 246 aaaatcatcaacttattcaagatatccaatcttcagtaaatgaaatcacagagtagctag 305
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct: 496 aaaatcatcaacttattcaagatatccaatcttcagtaaatgagatcacagagtggctgg 437

                                                                       
Query: 306 tgttttacaaggagcattccagtgtagtctatgattaattctacaacagaactacagtta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgttttacaaggagcattccagtgtagtctatgattaattctacaacagaactacagtta 377

                                                                       
Query: 366 atgtggaaggatttatgtatttgttaatatctgccaataacatatttctaagccaggaag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgtggaaggatttatgtatttgttaatatctgccaataacatatttctaagccaggaag 317

                                                                       
Query: 426 aagtaacatttcaggaatccctctatttccagagttgttacaggcttacacatttcatct 485
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aagtaacacttcaggaattcctctatttccagagttgttacaggcttacacatttcatct 257

                                                              
Query: 486 ccgtttctcctcaatgttttcacatttacgcgtaagccactcgcttttgca 536
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccgtttctcctcagtgttttcacatttacgcgtaagccactcgcttttgca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no078_j02.g1 MSMg01no078_j02.g1 CHROMAT_FILE:
MSMg01no078_j02.g1 PHD_FILE: MSMg01no078_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:56 2005
         (392 letters)



>mm_chr5_48830053_48830844
          Length = 792

 Score =  750 bits (388), Expect = 0.0
 Identities = 391/392 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggttagcatggaccgtgtgttagtctcaggaaacctgctatgacaataggttgaaacc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggttagcatgggccgtgtgttagtctcaggaaacctgctatgacaataggttgaaacc 260

                                                                       
Query: 61  tactggttctttgtaatagctttctgctgctcttcccctgctgtgtgcaggcaggcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactggttctttgtaatagctttctgctgctcttcccctgctgtgtgcaggcaggcaggc 320

                                                                       
Query: 121 tggctggtcccttgccaagcacaagacatttataagattctagtcaagatcattgaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctggtcccttgccaagcacaagacatttataagattctagtcaagatcattgaggct 380

                                                                       
Query: 181 ccaacttaaaatgacacatgagtgagctgtacagacaactgaggcataaggaggagagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaacttaaaatgacacatgagtgagctgtacagacaactgaggcataaggaggagagct 440

                                                                       
Query: 241 gttgaggcaggtcacaaagaaatatttatatctatcccctaaatatagggaggtggaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgaggcaggtcacaaagaaatatttatatctatcccctaaatatagggaggtggaaca 500

                                                                       
Query: 301 caaaataatgagctaaacaaaaaatttatttgtacctatcccctaaatattgggaaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaataatgagctaaacaaaaaatttatttgtacctatcccctaaatattgggaaagtt 560

                                           
Query: 361 tgctacagagaaaaagctaacttttgctgaaa 392
           ||||||||||||||||||||||||||||||||
Sbjct: 561 tgctacagagaaaaagctaacttttgctgaaa 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)