CCCCNNCCATCATAATTTGCGGCGCTATACGACTCACTTCGXXXXXXXXX
XXXXXXXXXXTTATTTCCACTAATGCATTCTGGAGTTTCTGCTCTACTTA
TAAAAGGAAACATTTTTAATTTGTGTTGGAGTCTTTGTTCATTTTTATTC
ACAACTTTATTATTTAAAAATATGAATGTGACACTAACAAAACTTAGTTC
ATAATTATATTTCTCGCATGAGAAATCAATTGACAAAAATGCTTTTGCAA
CATCATTTAAATCTGGAGCAAGAAAAGGAATCTTAATTAAAGTTGAAGAG
TTGAATATATTATTTGAAGTAATACAGAAAATTAATTATATTTGGAGGGG
AATAAGATGCTTTTAGCACCATGTGGAACAATATCTATAATGAGAGGCCA
ATCTTGGGACTTTTCTGTGGGTCCCAGAATCATTTTCCTTTCTCAAAGTT
CATTAGTGAGTTATGCTATACATCTTTGGGAACACTTATTTAAATACACA
TATAAGTAATACATGGCTACATGTATTACTACCTGTATTTAAGTCAGCAT
GTTGATATAATAGTAGTCTAGGGAAAAGACACCTGGTTCCTTAGTAGAAA
CAAACAAAAAAAAATGCAATTTCCCTTGTCTCCTAGGCGTGGTGTTATTT
TCTTTATGAATATGGTAATCCTCA

NCCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATTGAGCACTAGCTTACTTC
TCTGTATTCTATAAGTGTTTTTTTTGTTTGTTTGTTTTTCTGTTTTGTTT
TCATCAATAGGGCCTAATCATTAGCTTGTGGAGAACAACAGATAGCCATG
ACAATATCCTATGATATGTGGGGTATTTCATGGGACCCCTTTTGGCAAAT
GATTCAACAAGATATAACATGCATTCCTGACACCGGAGGTTTTACTTGGT
GGCACAGGATGTCTGGCTGGGGCGTTCTCTCTCCCCTTCTATGGTAATTC
CATTAATTTAGATTCCCTTCATCTATGCATGTACCTTAGGAAGCTTTTAT
TGTTTGGCAGTGCTAGGCTTCCATGTGATTTTTCAAAAGGCGTTTAGTGT
CAGTCTCCCTGCCACATAAATATTTCCTCTGTTACCCTTCTCTTCCATCT
CCTTCTCTGCTTAATCTCCCTAGTTTAGTTTCCCCCTTATCTCTCCAAAA
CCCTTTGTTCTACTTCCCCTTCTTTGGGAGGTCTTCTACTCCCTACTGGT
CCTATAACCTCTGAGGCTTTACTGAGAGTAAAACATATAACAAATGCTTA
CAAGTTAATATTCATGTATGA

Query= MSMg01no078_o20.b1 MSMg01no078_o20.b1 CHROMAT_FILE:
MSMg01no078_o20.b1 PHD_FILE: MSMg01no078_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:24 2005
         (600 letters)



>mm_chr5_19194889_19195891
          Length = 1003

 Score = 1108 bits (573), Expect = 0.0
 Identities = 595/603 (98%), Gaps = 3/603 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcattctggagtttctgctctacttataaaaggaaacatttttaatttgtgttggagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcattctggagtttctgctctacttataaaaggaaacatttttaatttgtgttggagtct 260

                                                                       
Query: 61  ttgttcatttttattcacaactttattatttaaaaatatgaatgtgacactaacaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttcatttttattcacaactttattatttaaaaatatgaatgtgacactaacaaaact 320

                                                                       
Query: 121 tagttcataattatatttctcgcatgagaaatcaattgacaaaaatgcttttgcaacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttcataattatatttctcgcatgagaaatcaattgacaaaaatgcttttgcaacatc 380

                                                                       
Query: 181 atttaaatctggagcaagaaaaggaatcttaattaaagttgaagagttgaatatattatt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 atttaaatctggagcaagaaaaggaatcttaattaaagttgaagagatgaatatattatt 440

                                                                       
Query: 241 tgaagtaatacagaaaattaattatatttggaggggaataagatgcttttagcaccatgt 300
            |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 agaagtactacagaaaattaattatatttggaagggaataagatgcttttagcaccatgt 500

                                                                       
Query: 301 ggaacaatatctataatgagaggccaatcttgggacttttctgtgggtcccagaatc--a 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 501 ggaacaatatctataatgagaggccaatcttgggacttttctgtgggtcccagaatccca 560

                                                                       
Query: 359 ttttcctttctcaaagttcattagtgagttatgctatacatctttgggaacacttattta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttcctttctcaaagttcattagtgagttatgctatacatctttgggaacacttattta 620

                                                                       
Query: 419 aatacacatataagtaatacatggctacatgtattactacctgtatttaagtcagcatgt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatacacatataagtaatacatggctacatgtattactacctgtatttaagtcagcatgt 680

                                                                       
Query: 479 tgatataatagtagtctagggaaaagacacctggttccttagtagaaacaaacaaaaaaa 538
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tgatataatagtagtctagggaaaagacatctggttccttagtagaaacaaacaaaaaaa 740

                                                                       
Query: 539 aa-tgcaatttcccttgtctcctaggcgtggtgttattttctttatgaatatggtaatcc 597
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatgcaatttcccttgtctcctaggcgtggtgttattttctttatgaatatggtaatcc 800

              
Query: 598 tca 600
           |||
Sbjct: 801 tca 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1003
Length adjustment: 10
Effective length of query: 590
Effective length of database: 993
Effective search space:   585870
Effective search space used:   585870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)