BAC Information

Click to search

BAC

Clone NameMSMg01-079B15
Chromosome5 (Build37)
Map Location 3,990,470 - 3,991,018
singlet/doubletsinglet
Overlap geneAkap9
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf
Downstream geneCyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079B15.T7 (MSMg01no079_b15.b1)MSMg01-079B15.TJ (MSMg01no079_b15.g1)
ACCAG300270AG300271
length729728
length of high quality
(start - end)
---548 (65 - 612)
definitionCHROMAT_FILE: MSMg01no079_b15.b1 PHD_FILE: MSMg01no079_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:38 2005CHROMAT_FILE: MSMg01no079_b15.g1 PHD_FILE: MSMg01no079_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGCCGCTAAACGACTCCTATATGCAGAGGATCCGCGGAATTCTTTGTC
TAGCTCACAGACCATTTATACTGGTTTAATCCGATTATCCGAAATCCTCC
TTCTTCGAACCCTTTTTATATATTGCATATGAGACCCCTATCCGAATTAG
GATACCTAAAGATCCTTTCCTCCTCTGCTGATGCCCTTTTTGTATTAATG
ACAATGCCTTTTGCCTTACACCAAGCTTTGCCTATTTATGAAATTCCCTT
TGATTATTCTTGCTCTTATCACTCACCCCTTTGCTGTCCTATTCCCGAAT
CTTTTTCCCCTGTGTCCATATCCTCCAGATTTTTCCCCACTTTCTCCTCT
ATAAATTTCAGTGTCTGCCTCTACGTGCATCTCCTAGACCCTCTTATATT
TCATCCTACTACAACGAGATAGGAATGCATCAACTCACATTCTTCTACAT
GATAACAACCAGTTGTGCCATCACCATTTGTTGAAAATGCTGTCTTCTTT
CCACAGGATGGCTTTAGCTCCCTTGTCGAAGATCTAGTGACCATATGTGT
GAGGGTTCATTTCTGTGACTACAATTCTATTCCATTGCTCTACATGTCTG
TCACTATACAACTACCATGCATTTTTTAATCCCAATTGCTCTGTACTACA
GCTTTACGCCAGGCATGTCGATTCCACCAGCAGTTCTTTTATCCTCCAGA
AGAGTTCTTGCTATCTTAGGTTTTTTGTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGGATAGAGAAGCTGGGTAGCACCCTGACGCTAAT
AGGACTGTGTTCCAGCTGAAGCCTGAACAGAAGGGCTGAAATGTCACAAC
AAACCTGGTGATGAGGAAGAAGGTGTTATGGACCAGGAGTACAAGGACTA
ATGCAGGCAGAGCCTTCAACAGCAGCAGCCAAAGCAGCAAAGAGAAGCAA
GAAAAGGCCAAGCCCACTGGACTGTGACCATCTGCCCTGCGTAGATTTGT
ACCCTTAGCCTGAGATGACTCAGAAAGAACAGGAGACGGCTTGGCAGGCC
AAGGCACTTCAAGACTGAAGACCTGAGTGTGTTGATCCCTAGAAGAAACA
TAGTAGAAGGATGAGACTCATTTGCACAGGTTGAAGTTTTTGACCTTTAC
TTGCACACAGTGACACACACATGCACACACAAACTCAGAAGATAAGCATT
AAAAACAAATGACCCATTTTTAAAAAGTTCACATAATGGTTAAATACTTT
GATGCTAAGAATGTTTATGATTTAGAAAATGATTGTGTTTGTCACACTTA
CAGAAATGTATTCATGTTTGTGGGACATTGGACCATGTAAGTAAATACCA
ATAAGGATAAGATTGAGGAAGAAATGCTATCCCAGCTTGACATGTAACTC
ACGAGAAACACATATTTACTTAGTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_b15.g1 MSMg01no079_b15.g1 CHROMAT_FILE:
MSMg01no079_b15.g1 PHD_FILE: MSMg01no079_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:38 2005
         (548 letters)



>mm_chr5_3990269_3991216
          Length = 948

 Score = 1011 bits (523), Expect = 0.0
 Identities = 542/549 (98%), Gaps = 2/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tggatagagaagctgggtagcaccctgacgctaataggactgtgttccagctgaagcctg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tggatagagaagctgggtagcaccctgacgctaataggactgtgttccagctgaagcctg 261

                                                                       
Query: 62  aacagaagggctgaaatgtcacaacaaacctggtgatgaggaagaaggtgttatggacca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacagaagggctgaaatgtcacaacaaacctggtgatgaggaagaaggtgttatggacca 321

                                                                       
Query: 122 ggagtacaaggactaatgcaggcagagccttcaacagcagcagccaaagcagcaaagaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggagtacaaggactaatgcaggcagagccttcaacagcagcagccaaagcagcaaagaga 381

                                                                       
Query: 182 agcaagaaaaggccaagcccactggactgtgaccatctgccctgcgtagatttgtaccct 241
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 382 agcaagaaaaggccaagcccactggactgtgaccatctgccctgcctagatttgtaccct 441

                                                                       
Query: 242 tagcctgagatgactcagaaagaacaggagacggcttggcaggccaaggcacttcaagac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tagcctgagatgactcagaaagaacaggagacggcttggcaggccaaggcacttcaagac 501

                                                                       
Query: 302 tgaagacctgagtgtgttgatccctagaagaaacatagtagaaggatgagactcatttgc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgaagacctgagtgtgttgatccctagaagaaacatagtagaaggatgagactcatttgc 561

                                                                       
Query: 362 acaggttgaagtttttgacctttacttgcacacagtgacacacacatgcacacacaaact 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acaggttgaagtttttgacctttacttgcacacagtgacacacacatgcacacacaaact 621

                                                                       
Query: 422 cagaagataagca--ttaaaaacaaatgacccatttttaaaaagttcacataatggttaa 479
           |||||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 622 cagaagataagcacattaaaaacaaatgacccattttaaaaaagttcacataattgttaa 681

                                                                       
Query: 480 atactttgatgctaagaatgtttatgatttagaaaatgattgtgtttgtcacacttacag 539
           || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 682 attctttgatgctaagaatgtttatgttttagaaaatgattgtgtttgtcacacttacag 741

                    
Query: 540 aaatgtatt 548
           |||||||||
Sbjct: 742 aaatgtatt 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)