Query= MSMg01no079_c09.b1 MSMg01no079_c09.b1 CHROMAT_FILE:
MSMg01no079_c09.b1 PHD_FILE: MSMg01no079_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:41 2005
(668 letters)
>mm_chr5_22140082_22141149
Length = 1068
Score = 766 bits (396), Expect = 0.0
Identities = 444/460 (96%), Gaps = 5/460 (1%)
Strand = Plus / Plus
Query: 212 gaataggaatcaaaaatgggaacatcggtggaaggtggaggatctctgagttccagatca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaataggaatcaaaaatgggaacatcggtggaaggtggaggatctctgagttccagatca 470
Query: 272 gccagttctacacagtgtgactctttcttgaaagacagat-tacaggaaagaaggaataa 330
|| |||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 471 gctagttttacacagtgtgactctgtcttgaaagacagatatacaggaaagaaggaataa 530
Query: 331 agggaag-aagggagggagaaagaaaaaaagaaaatagaaagaccagtacatgtgctatc 389
|||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 531 aggg-agaaagggagggagaaagaaaaaaagagaatagaaagaccagtacatgtgctatc 589
Query: 390 tataggttatagactatacaagggttagtactctgaatatctagttaacaaggaactaac 449
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 590 tataggttatagactatacaagggttagtactctgaatatctagtttacaaggaactaac 649
Query: 450 agatttgtgactttctggagccctccaaatgtaaagagcaaggtctgaaaa-agtaaagt 508
||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||||
Sbjct: 650 agatttgtgactttctggaaccctccacatgtaaagagcaaggtctgaaaaca-taaagt 708
Query: 509 aagatacagaattaagggtctagttaatcactagactgaataatttattctagttagtca 568
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 709 aagatacagaattaaaggtctagttcatcactagactgaataatttattctagttagtca 768
Query: 569 gcttccatagtctcttatatttgactgtacattttttatatgtcaagtagaattaatact 628
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 769 gcttccatagtctcttatatttgactgtacattttttatgtgtcaagtagaattaatact 828
Query: 629 tactgtttctatatttgctaccctttccagggttttgatg 668
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 829 tactgtttctgtatttgctaccctttccagggttttgatg 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_c09.g1 MSMg01no079_c09.g1 CHROMAT_FILE:
MSMg01no079_c09.g1 PHD_FILE: MSMg01no079_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:41 2005
(558 letters)
>mm_chr5_22295374_22296331
Length = 958
Score = 603 bits (312), Expect = e-177
Identities = 315/316 (99%)
Strand = Plus / Minus
Query: 1 ttcagtgtttcaaatctccaatagatgattaacaagtataccaacatgttaatctttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttcagtgtttcaaatctccaatagatgattaacaagtataccaacatgttaatctttgac 257
Query: 61 ttaaaaatccccattgtttaaacagttaatgaaagatatagctgccacttatgacaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttaaaaatccccattgtttaaacagttaatgaaagatatagctgccacttatgacaaaaa 197
Query: 121 tatttgtgaataatatatttgataaagagtactattcgaaatatataaaaagcccttata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tatttgtgaataatatatttgataaagagtactattcgaaatatataaaaagcccttata 137
Query: 181 actcaacaataaggcaaagagctactaaactgcttaaatagttaatttaccaaatcagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 actcaacaataaggcaaagagctactaaactgcttaaatagttaatttaccaaatcagac 77
Query: 241 atatgaatggctaataagtatatgaaaatgtacttaacatgatttatttatttacaaatc 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 76 atatgaatggctaataagtatatgaaaatgtacttaatatgatttatttatttacaaatc 17
Query: 301 aaaaccaaaatgaaat 316
||||||||||||||||
Sbjct: 16 aaaaccaaaatgaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
