BAC Information

Click to search

BAC

Clone NameMSMg01-079L13
Chromosome5 (Build37)
Map Location 96,755,735 - 96,756,069
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041296, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079L13.T7 (MSMg01no079_l13.b1)MSMg01-079L13.TJ (MSMg01no079_l13.g1)
ACCAG300734AG300735
length733716
length of high quality
(start - end)
---335 (67 - 401)
definitionCHROMAT_FILE: MSMg01no079_l13.b1 PHD_FILE: MSMg01no079_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:25 2005CHROMAT_FILE: MSMg01no079_l13.g1 PHD_FILE: MSMg01no079_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAATTCCGA
GATTTTCTCTTTTGATTCACTTTCCCTCGGATTCCCCACGCCCGCCTGGG
ACGGCCTGCAATTAGCACGCCTAAATATGCCTTCCTCTCCCCTTGGTAGA
TGCGTACGCGGTACAGGTGATCACGATCCGCGTGTCCCGCCCCCGACCCT
CACCTGGCCAGACCCGGTGCAGCGCCCGGTGCCTGCGCGAGGATGTAGTC
CCAGTAGCGTCCGGCGAGCTCACCGGCCGCTTTCACGTCTAGGCCGCTCT
GCTGGCCGGTGTGCTTCTTGTTGCGCCCCCGCTCTCGGTAACCGCGTTCC
GAGACTCCGCTGCCCGCCGTCTGCCTCCGCGCTGTTCGCATTGTCTCCCG
CGTCCACGGTCCTGCTTTCCCGCCGAGCTGTTTTCACCTGTGAGGTTCTG
ATATCCGCTCTTTCATTGTATGTATCTCGTCGTTTCGTGGTCCCCCGATT
CGCTCCCTTTCCCCTGCGTCCTTTACACGGTCACCCGCGTTTCCCGATTC
GATGAGTTCCGCTCTCCCTTTCGCACATCACTACTTCTCCTTTACTCGTC
CTCACCTCGTCTCTTACGTTCTCTCATCCCTTCGAGTCCTTCTCTTTCCT
TTTCATTCTAATCCCCATCACAATTTTCTCTTATATCCGATCCTTTTCCT
ATTATCTAATCTTTTCTCCCTTCCTTCTCCTAC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCGTGCTGTTTATTAATTCAAGACATATGTAG
CTTCTAAAAAGCATTGCTCCACACAAGACCCTTCAAAAAACAACCAGTAG
TAAGTTTTTAAACACCTCTCTGTTGGTGATGGTCATACATTGAAGGTGTA
AAATCTTCAGAATATATTAAGGAAAAGGATCTGCTAACCAATATGTGAAA
TTCCTCATTTAAAAGTCCCATTTCTGCCACCCCAGCGAGCTTCTCACAGG
CTGCAGTAATGTGCGCATAATCTTCTAGCTATGATTCAGCTGTGGAGTGC
ACGCTGTGGCAAGGACTTCAGTCTCCTGGGACCTGAGGTAATTCCAGGTC
GGTAGAGACTGGAGGTGCTGGGAGCACTTTCTCTGTGGTACAGTTTGATG
CTTGCATTAATAGCGTTTATAAGGCCAGTTCTCCTACAGGTCCACATGAA
ATGACTACGATCTCACATAGGCTTTCCCTAACTCTCCTCTCTAGCACCAT
GCCACATTACTGTCTATTCGCCCCACCCCCATTCCTTTGCGCATAGCATT
CATCAAGACCTGTAGGTACGTTAACATGTTTATTGATGTTCCTAACCTAT
TAGACTGCAAGTTCCTGATAGCTAGCCTATTGTCACCTTCCCTATCTCAT
TGTCCCCAGGGTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_l13.g1 MSMg01no079_l13.g1 CHROMAT_FILE:
MSMg01no079_l13.g1 PHD_FILE: MSMg01no079_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:25 2005
         (335 letters)



>mm_chr5_96755535_96756269
          Length = 735

 Score =  580 bits (300), Expect = e-170
 Identities = 327/336 (97%), Gaps = 2/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcgtgctgtttattaattcaagacatatgtagcttctaaaaagcattgctccacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 catcgtgctgtttattaattcaagacatatgtagcttctaaaaagcattgctccacacaa 476

                                                                       
Query: 61  gacccttcaaaaaacaaccagtagtaagtttttaaacacctctctgttggtgatggtcat 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gacccttcaaaaaacaaccagcagtaagtttttaaacacctctctgttggtgatggtcat 416

                                                                       
Query: 121 acattgaaggtgtaaaatcttcagaatatattaaggaaaaggatctgctaaccaatatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 415 acattgaaggtgtaaaatcttcagaatatattaaggaaaaggatctgttaaccaatatgt 356

                                                                       
Query: 181 gaaattcctcatttaaaagtcccatttctgc-caccccagcgagcttctcacaggctgca 239
           ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct: 355 gaaattcctcatttaaaagtcccatttct-ctcaccccagagagcttctcacaggctgca 297

                                                                       
Query: 240 gtaatgtgcgcataatcttctagctatgattcagctgtggagtgcacgctgtggcaagga 299
            |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 296 ataatgtgcgcataatcttctggctatgattcagctgtggagtgcacactgtggcaagga 237

                                               
Query: 300 cttcagtctcctgggacctgaggtaattccaggtcg 335
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 236 cttcagtctcccgggacctgaggtaattccaggtcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)