Query= MSMg01no079_m18.b1 MSMg01no079_m18.b1 CHROMAT_FILE:
MSMg01no079_m18.b1 PHD_FILE: MSMg01no079_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:31 2005
(591 letters)
>mm_chr5_96769840_96770833
Length = 994
Score = 1048 bits (542), Expect = 0.0
Identities = 577/590 (97%), Gaps = 3/590 (0%)
Strand = Plus / Minus
Query: 5 gaattcctattataacagagtcttataattgttttgttttattcgtcactaatctcttac 64
||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 676 gaattcctattataatagattcttataattgttttgttttattagtcactaatctcttac 617
Query: 65 tgtttaagagcagttacagattaggatgaagactcaaattttattgtagatatatgtatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtttaagagcagttacagattaggatgaagactcaaattttattgtagatatatgtatg 557
Query: 125 taccaaaataatgcactacgtatccaaaataagcatgactggtgttttcggggatcttct 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 556 taccaaaataatgcactacgtatccaaaataagtatgactggtgttttcggggatcttct 497
Query: 185 gggggccttgaaatattgtgtgtgatggggagaaccactagagagaaatcaagcaggagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggggccttgaaatattgtgtgtgatggggagaaccactagagagaaatcaagcaggagg 437
Query: 245 aacttgatcatgaaaggagccaggctctcaccacggaactctccagtactattaggattt 304
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 436 aacttgatcatgaaaggagccaggctctcaccacggaactctctagtactattaggattt 377
Query: 305 gtgctcttcttttgggttcagagcatctgtgtgatttagacacagcacagaagttctgtg 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gttctcttcttttgggttcagagcatctgtgtgatttagacacagcacagaagttctgtg 317
Query: 365 aagagagtgtccaattagatgtaaaaatggcaccatacagagagcttaagacatctgatg 424
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 316 aagagagtgtccgattagatgtaaaaatgacaccatacagagagcttaagacatctgatg 257
Query: 425 acatatgtgtt---aatgatggcataaaatcctcttatagttatatgacattggctgtgg 481
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 256 acatatgtgttcacaatgatgacataaaatcttcttatagttatatgacattggctgtgg 197
Query: 482 atgtttcagtggtagagcatttgttgagtgtgttcaaaggccttggcttcaattccaagc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atgtttcagtggtagagcatttgttgagtgtgttcaaaggccttggcttcaattccaagc 137
Query: 542 cctgcaaaaaatagtgaaataattaatagttacttaaaaccaagatccac 591
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cctgcaaaaaatagtgaaataattaatagttacttaaaaccaagatccac 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 994
Length adjustment: 10
Effective length of query: 581
Effective length of database: 984
Effective search space: 571704
Effective search space used: 571704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_m18.g1 MSMg01no079_m18.g1 CHROMAT_FILE:
MSMg01no079_m18.g1 PHD_FILE: MSMg01no079_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:31 2005
(547 letters)
>mm_chr5_96619464_96620409
Length = 946
Score = 980 bits (507), Expect = 0.0
Identities = 537/549 (97%), Gaps = 6/549 (1%)
Strand = Plus / Plus
Query: 1 aaagagaataattcagtgaatgtatggatgaataaatgctttgtttaagatcccaatggc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaggataattcagtgaatgtatggatgaataaatgctttgtttaagatcccaatggc 260
Query: 61 aaggaaagacaaagataggtttaatatccactgaatacatctccccaggcttctttttgg 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 261 aaggaaagacaaagataggtttaagatccactgaatacatctccccaggcttctttctgg 320
Query: 121 ttccctgagctccaccctgttgttttttcagaacaaaaagacagcccacaaatccttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctgagctccaccctgttgttttttcagaacaaaaagacagcccacaaatccttatc 380
Query: 181 ttcctcaaatcttttttccctgaaacaataaataacaagttttgtttctggtaacaattt 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttcctcaaatcttttttccctgaaacaataaataacaagttt-gtttctggtaacaattt 439
Query: 241 ggcaagaaatgatgacaagaataagtcaaataaatgcctgcttctgagtccaatgtggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcaagaaatgatgacaagaataagtcaaataaatgcctgcttctgagtccaatgtggtc 499
Query: 301 gcgcacacttaggatgcagtttagaaggattgccatgagttcaaggccagcctggttgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcgcacacttaggatgcagtttagaaggattgccatgagttcaaggccagcctggttgcc 559
Query: 361 tggtcaacatagtgagtcccggggctagccagagctacacagccttcttcccaaaggggg 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 tggtcaacatagtgagtcccggggccagccagagctacacagccttcttcccaaaggggg 619
Query: 421 ggcgggct--gcatactgaaggtgtgggttagtatcttagtttacagctgtctatagtaa 478
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtg---tatgcatactgaaggtgtgggttagtatcttagtttacagctgtctatagtaa 676
Query: 479 atatcttgattgctgtgaacatggcttcatagaccttaaatgtacaaattgacatttatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atatcttgattgctgtgaacatggcttcatagaccttaaatgtacaaattgacatttatt 736
Query: 539 ttctaatgc 547
|||||||||
Sbjct: 737 ttctaatgc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
