XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
AAAATTAAGGGACAGCATACCCAAATTTATGGGACACAATAAAAGCAGTA
TTAAGAGGGAAGTTCATATTACTTCCATAAAGTGCTTCCATAAAGAAATT
AGAAAAATTTCATATTAGTAATTTAAAAGTACACGTGAAAGCTCTAGAAA
AAAAAAAAAAGAAGCAAGCACACCAAACAGGTGTAGAAGGTAGGAAATAA
TAAAACTCAGGGATGAAATCAATCAGAAACAAAGAAAACAATACAAAGAA
TCAAGACCTAGTTCTTTGAGAAAATCAACAAGATAGACAAACCTTTAGCA
AAACTAATGAAAGAGACAGAGACAATATCAAAATAAATAAACTCAGTAGA
AAAGAGGGAGACATAACAAGTGACATTGAGGAAATTCAAAGAATCCTAAG
TTCTTACCTTAATGAAATGGAAGAATTTCTAGACAGATACCACTTACCAA
TATTAAATCAACATCAAGTAAATTTAAACAACCCCATAACCTCTAACTGA
ATTGAAACAGCCATTAAAACTTTCACAACCAAAAAAAAAAAAAAAAAAAA
AAGCCCAAGGCAAGACATGATGTCATGCATAGGTTTTGACACAGCTAGAG
CTATGCCAGAAGAGGCATAAGCCAGTCAGGGGTAGAGGTTTCTTAGTTAA
TGACTAATGCATAACTGAAAGGC

TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGGCTTCTTTGTGGAAGAGAATAATTTATTGACT
ACCTGGACCATGTTCTCTATGATAATCAATAAGTGCTCTCCAGTATATGT
ATGGATTTTAAAGAACTTTGACTAATGCACTAATACACTGCCCTATATTT
AGGTTTTATTTGTAGCGATGTCCTTCCAGGATATGTTAGAACTGTTTCTG
ATGCTGTTGAACTTTCTTCACTGATACCTATAAATATATTTATATCAATA
AATATTTAGAAAGCATCTTCTGTCTACACAGTATCACAGAAAGTATCTCA
GATACATACATACATACATATATATATATGTATACATATATATATATATA
CATGTATACATATATATATGAGAGAGAGAGAGAGAGAGCATATAGAACAC
TCTATGTCATATAAATCCCTGCCTTAAGTAGCATCAAATTTCAGATATAA
TTTCATATACCATACATCATTCTATTTTTTTTCAGTACAGGGGAACAACA
GGGCCAAGAATTGGTAGTGCCTGGCTGGGCAAGTGCCTTCCACCCCTTTC
CTCCCCTCCATCCATTCTCCTTTCACTCTCATTCACACCTACCATATTCC
CTTCCCCCACCTTTTCTTTTCCTCTTTTCCCTCTTTCCTTCCCCCTTCCC
CTCTCTTTTCCTTTCT

Query= MSMg01no079_p24.g1 MSMg01no079_p24.g1 CHROMAT_FILE:
MSMg01no079_p24.g1 PHD_FILE: MSMg01no079_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:46 2005
         (496 letters)



>mm_chr5_79667405_79668300
          Length = 896

 Score =  553 bits (286), Expect = e-162
 Identities = 388/428 (90%), Gaps = 16/428 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggcttctttgtggaagagaataatttattgactacctggaccatgttctctatgataa 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 413 ctggcttctttgtggaagagaataatttattgactacctggaccacattctctatgataa 354

                                                                       
Query: 61  tcaataagtgctctccagtatatgtatggattttaaagaactttgactaatgcactaata 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 353 tcaataagtgctctccagtatatgtatggactttaaagaactttgactaatgcactaata 294

                                                                       
Query: 121 cactgccctatatttaggttttatt-tgtagcgatgtccttccaggatatgttagaactg 179
           ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||  
Sbjct: 293 cactgccctatatttaggttttattct-tagctatgtccttccaggatatgttagaacaa 235

                                                                       
Query: 180 tttctgatgctgttgaactttcttcactgatacctataaatatatttatatcaataaata 239
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 234 tttctgatgctgttgaactttcttcgctgatacctataaatatatttatatcaataaata 175

                                                                       
Query: 240 tttagaaagcatcttctgtctacacagtatcacagaaagtatctcagatacatacataca 299
           |||||||||||||||||||||||||||||||||||||||||||||||||          |
Sbjct: 174 tttagaaagcatcttctgtctacacagtatcacagaaagtatctcagat----------a 125

                                                                       
Query: 300 tacatatatatatatgtatacatatatatatatatacatgtatacatatatatatgagag 359
           || |||| ||||||| |||||||| ||| | | | | | | | | | | | | | |||||
Sbjct: 124 tatatat-tatatatatatacatacatacagagagaga-g-agagagagagaga-gagag 69

                                                                       
Query: 360 agagagagagagagcatatagaacactctatgtcatataaatccctgccttaagtagcat 419
           ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 68  agagagagagagagcatatagaacattcaatgtcataaaaatccctgccttaagtagcat 9

                   
Query: 420 caaatttc 427
           ||||||||
Sbjct: 8   caaatttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)