ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATAATGTACCAACTGTGCTTGTGTGGGGGTCACTTAATCGCCTTCTAAGT
GTTTTGATTCTCTTTTGCAAAGGGACTGATTTTTCTTTTTCTTTTTCAGA
CTTAGTGGAGTGCCAAAAGAGCAAAGAGCAGTCAGTGAGTGGAAAGCAGG
TAACACAAAATAAACAGAGAGAGTTCAGCAAAGCACATGACCAACTCCAG
CCTCCCAGTAGTGCACGGGGGCATTTTAGCTTAATGCTGTAGCTGCCTCA
GGGCAGTATTTGCTACTCATTACCCTGCCTTTTCCTTCTGGTAGGAAGCC
AAAGCAGAATTTGGAGCCACGTGATGGTACAGCCTCACTTTGTGCTGTTC
TTTAGAGGTAGAGAGATCTTGACATGCATAGCATGCTTGGCTAGAATTTT
AGAAAGTTCCTCTTTAATCATAAGGCTTTGAGGGAATATGACTGCTCTGT
GCAAACAACAGCCATTTTACTCCTCTGTACGTTGCTGCCTTTAGGGATAG
TTACCTTCGTCCTACTAGAACTGAATCTCTGTGCTGAGGAATATGACTGA
CGTTGAATGTATGGGTGGCCCAGTTATGAATCTTCCTTAAAGATGAAAGT
CAACCTCTGACCGTGTTTTACAAATCGCACTGCAGCGAA

GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCCATGAAATGCTGTTCTCTAGACA
AGGTATGGCTTGCACACATGAACTCTCAGCAGCCATAGGTATCAGCACAT
TTCAGTAAGAAATCCAGCCTAAATGATGAGGCCTCTCAAGGCCCTACCCC
AAGCTGAGAAACTATAGGCAGTTGGTAACTATAGGGAGGAGTCACTTTTC
ATTTGGGGGGTACCCACTTGTAGGTTGACCATACTTAAGTGGATGACTCC
ATACCTATGTGAACATGGGTAGCACCAAATGGTGTCAGTGTATTACAATA
GAAAGCACATGAAATTAGGAGTGAGATGTATTGGAGATCAAAAAGTAGAA
AACCCTGAGAGAATATTGGAGAGAGGATATGAGGAATGAATACAATCAAG
ATTCATGTGTTTAGATGTATAACATTTTCCAAAAAATATGATTCAAAAAG
AAGAAAGTAGAAGCCACAGAGCTACTGAGGGAGACCCCGTTTCAGGCTCT
AGACAGCCAAGCACCTTCCCTGCCATAGGAGAGGTGTCCACTCCGCTCAG
AAGGGCTTTGCTGTAGCAACTGGGGTGAGCCACCTTGGTTCCCAGATTCT
GCCGAGACTAGTCTGTGCAAGTGAGAGTGTGGACTACAGAAGT

Query= MSMg01no080_b09.b1 MSMg01no080_b09.b1 CHROMAT_FILE:
MSMg01no080_b09.b1 PHD_FILE: MSMg01no080_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:53 2005
         (387 letters)



>mm_chr5_43423009_43423796
          Length = 788

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataatgtac-caactgtgcttgtgtgggggtcacttaatcgccttctaagtgtt 63
           |||||||||| | ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gaattcataaggaacagaactgtgcttgtgtgggggtcacttaatcgccttctaagtgtt 527

                                                                       
Query: 64  ttgattctcttttgcaaagggactgatttttctttttctttttcagacttagtggagtgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttgattctcttttgcaaagggactgatttttctttttctttttcagacttagtggagtgc 467

                                                                       
Query: 124 caaaagagcaaagagcagtcagtgagtggaaagcaggtaacacaaaataaacagagagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caaaagagcaaagagcagtcagtgagtggaaagcaggtaacacaaaataaacagagagag 407

                                                                       
Query: 184 ttcagcaaagcacatgaccaactccagcctcccagtagtgcacgggggcattttagctta 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 406 ttcagcaaagcacatgaccaactccagcctcccagtagtgcatgggggcattttagcttc 347

                                                                       
Query: 244 atgctgtagctgcctcagggcagtatttgctactcattaccctgccttttccttctggta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 346 atgctgtagctgcctcagggcagtatttgctactcattaccctgccttttccctctggta 287

                                                                       
Query: 304 ggaagccaaagcagaatttggagccacgtgatggtacagcctcactttgtgctgttcttt 363
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 286 ggaagccaaagcagaatttggagccacgcgatggtacagcctcactttgtgctgttcttt 227

                                 
Query: 364 agaggtagagagatcttgacat 385
           ||||||||||||||||||||||
Sbjct: 226 agaggtagagagatcttgacat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 788
Length adjustment: 9
Effective length of query: 378
Effective length of database: 779
Effective search space:   294462
Effective search space used:   294462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)