BAC Information

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BAC

Clone NameMSMg01-080F06
Chromosome5 (Build37)
Map Location 118,124,328 - 118,124,587
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
Downstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F06.T7 (MSMg01no080_f06.b1)MSMg01-080F06.TJ (MSMg01no080_f06.g1)
ACCAG301198AG301199
length697794
length of high quality
(start - end)
290 (67 - 356)44 (74 - 117)
definitionCHROMAT_FILE: MSMg01no080_f06.b1 PHD_FILE: MSMg01no080_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:12 2005CHROMAT_FILE: MSMg01no080_f06.g1 PHD_FILE: MSMg01no080_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCCAGAGGATCCGCGGACTT
CAGATCTTCCCCGGTTGGATGATACCTGTGACTTTTACCAATGTGCTCAT
CTATTCAACAGTAACAACAGCTGCTACAGCTGTTACAGTGTCCTGGCATG
CTTTGTCCAAACCATATACCTTTGTCAGCTACAACAGAAACAAGACCCAG
GCCCATGATATACCTATATATGTGCACTGAAGCTATCAGTTGAAACTCAT
CCTGTGAAGAAAGCCTCCCAGGGAGCATCAGTTAAGGAGAGAGGGTGGAC
ATTTATTTGCATGTGTTTTTCAAGTATTATAAAAAAAAAGGAACATATTG
AATGGGGTCTTACAGGATTGCGTGAGGCACAGGAACAGGCAATATGCAGG
ATCCATAAAGGACTTAACACTCATTACAGAACTTTGTCTGATTGGCACGT
ATGACCGACAGGAAGGATAGCGATGACTGACCTTTCACAGAGGTGGTCCT
GACTAGGAGGCGGCTGGAGGTCACTTCTTACAGAAGCGCTCACGAGTCAT
GTCATCTCTCTTCTGCTACTACCCCATGCCTGTTTACTATCATATGCCAA
TATACCCTGTCCCGTATCGTTTGTTTATAAACTGGATAATTACCCTTCTC
TTTTTTTACACCCCCATTTAACTTTTCAATACCGCCCCCCCCCTTTC
CTGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGACCTTTCTTCTGCATCATGTAGC
CTCTGTTCTTTCATTCACACAATGGNGGCTTACTTATTCCTCTTACACTG
TAACTTGAGGGACTAGATGAGGTGATCGGTGTGTGCGGAGGCACTCCTCC
CCATCCCCTCCTTTTATCCTCCCTTCCTCCCACTCCGTTTACCCCTGCAC
CGATTCGTTTCTCCCCTCTGTCCCCCCCCTTCCCCCTTATTCACTCTCTC
CTATTCCCCCCTACCCTTATTGTTCTTTTTTTCCCCCTATTCCCCCGCCC
CCCCCCCCTATATTCTTCATACGCACTTCCCACTCCCCTCCCCCCCCCCA
CCTCTTCTTTTGTCTCCCCCTCCCTCGTTCTTTTCCCTTCTTTTTTTCTC
TTCCCCCCCCCCCCCCTTTCTCCCCTTCTCTCCCCCCTTTTCCCCCTCCC
TTTTTCTTCTTTTCTATCCCCTTACCCCCGTCCCCTCTTATCTCCCCCTT
TTTCATTTTTTTTTTCCCCCTCACTCTCTTTCCACCCCCTCTCTCAACCC
TCCTCCCCCCCCCCTTTAACCCCTCTCCTCCTTCCCTCCTCTCTCCCCCC
CCGTTATTCCCCTATATCCCCTCATTTTATACTCTTCTTCCCCTTCATCC
CTCTCCCTCCCTCCCCCCTTTACCCCTCTCTCCCCGCCTCCCCTTCTTTC
TCCACATCCTCTCTTTCCCACTCTTCCTCTTTTTCTCTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f06.b1 MSMg01no080_f06.b1 CHROMAT_FILE:
MSMg01no080_f06.b1 PHD_FILE: MSMg01no080_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:12 2005
         (290 letters)



>mm_chr5_118124128_118124817
          Length = 690

 Score =  410 bits (212), Expect = e-119
 Identities = 256/292 (87%), Gaps = 34/292 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatgatacctgtgacttttaccaatgtgctcatctattcaacagtaacaacagctgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatgatacctgtgacttttaccaatgtgctcatctattcaacagtaacaacagctgcta 260

                                                                       
Query: 61  cagctgttacagtgtcctggcatgctttgtccaaaccatatacctttgtcagctacaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctgttacagtgtcctggcatgctttgtccaaaccatatacctttgtcagctacaaca 320

                                                                       
Query: 121 gaaacaagacccaggcccatgatatacctatatatgtgcactgaagctatcagttgaaac 180
           |||||||||||||||||||||                                |||||||
Sbjct: 321 gaaacaagacccaggcccatg--------------------------------ttgaaac 348

                                                                       
Query: 181 tcatcctgtgaagaaagcctcccagggagcatcagttaaggagagagggtggacatttat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tcatcctgtgaagaaagtctcccagggagcatcagttaaggagagagggtggacatttat 408

                                                               
Query: 241 ttgcatgtgtttttcaagtattataaaaaaaaa--ggaacatattgaatggg 290
           ||||||||||||||||||||||| |||||||||  |||||||||||||||||
Sbjct: 409 ttgcatgtgtttttcaagtattaaaaaaaaaaaaaggaacatattgaatggg 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)