Query= MSMg01no080_m03.b1 MSMg01no080_m03.b1 CHROMAT_FILE:
MSMg01no080_m03.b1 PHD_FILE: MSMg01no080_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:46 2005
(624 letters)
>mm_chr5_5617756_5618780
Length = 1025
Score = 955 bits (494), Expect = 0.0
Identities = 500/502 (99%), Gaps = 1/502 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtacagagttt-aaaaacccctcataattgttcatagactagtgttaagtaag 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaattcagtacagagtttaaaaaacccctcataattgttcatagactagtgttaagtaag 443
Query: 64 taggaaaatagtatcatataggacagggttttacattctcataaactgaaatatgcatca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taggaaaatagtatcatataggacagggttttacattctcataaactgaaatatgcatca 383
Query: 124 gccaggattaatgattgtattgaccatttttgccattggtcattttatattttttcatgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gccaggattaatgattgtattgaccatttttgccattggtcattttatattttttcatgt 323
Query: 184 tttaatttttactgaaatgctaggttcaatggaattataaaatcttaaactgtctaatta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttaatttttactgaaatgctaggttcaatggaattataaaatcttaaactgtctaatta 263
Query: 244 aaaatggcttgtgacctgagtgacagtcattgatacagtgtatcaattctttttttgttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaatggcttgtgacctgagtgacagtcattgatacagtgtatcaattctttttttgttt 203
Query: 304 gtttattagatattttcttcatttacatttcaaatgctatcatttttctatcccatatgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 202 gtttattagatattttcttcatttacatttcaaatgctatcatttttctatcccatacgt 143
Query: 364 cgcagtgtatcaattcttaaatttgtacataagaaacaattagcttgcagtgccctctta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cgcagtgtatcaattcttaaatttgtacataagaaacaattagcttgcagtgccctctta 83
Query: 424 catgcatgcacctctgagggctagcggtgcaggcgagtgggaggcttaggactggcatgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 catgcatgcacctctgagggctagcggtgcaggcgagtgggaggcttaggactggcatgc 23
Query: 484 acaagggcccagctcgaacccc 505
||||||||||||||||||||||
Sbjct: 22 acaagggcccagctcgaacccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space: 623210
Effective search space used: 623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_m03.g1 MSMg01no080_m03.g1 CHROMAT_FILE:
MSMg01no080_m03.g1 PHD_FILE: MSMg01no080_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:46 2005
(360 letters)
>mm_chr5_5459444_5460203
Length = 760
Score = 658 bits (340), Expect = 0.0
Identities = 355/360 (98%)
Strand = Plus / Plus
Query: 1 atggcttgacttggggagctcaagatgagcgcacagtatgccttggtttgttagagcagc 60
||||||||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||
Sbjct: 201 atggcttgacttgaggagctcaagatgagctcacagtatgcctcggtttgttacagcagc 260
Query: 61 actaaccactaccttctctgaacaggagtttcatcctctgttatcttgatttagcttccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaccactaccttctctgaacaggagtttcatcctctgttatcttgatttagcttccg 320
Query: 121 tggtgattagtgagttctggggagttggttttaatgattatgtagcttacttgatggagt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tggtgattagtgagttctggggagttggttttaatgattacgtagcttacttgatggagt 380
Query: 181 atggaacatgaaaagccacatccaaacccaggatttgttcatgtctctacgaaggtctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggaacatgaaaagccacatccaaacccaggatttgttcatgtctctacgaaggtctag 440
Query: 241 acttggggctggaagcagagctcacagtgactatgagttaatgtaatttttagtgagaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttggggctggaagcagagctcacagtgactatgagttaatgtaatttttagtgagaac 500
Query: 301 tggtagcattattttgccagggatatttttttaataatatggggggagggtaaaatgaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtagcattattttgccagggatatttttttaataatatggggggagggtaaaatgaaa 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
