BAC Information

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BAC

Clone NameMSMg01-081E13
Chromosome5 (Build37)
Map Location 15,185,064 - 15,185,628
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081E13.T7 (MSMg01no081_e13.b1)MSMg01-081E13.TJ (MSMg01no081_e13.g1)
ACCAG301922AG301923
length703698
length of high quality
(start - end)		565 (65 - 629)572 (68 - 639)
definitionCHROMAT_FILE: MSMg01no081_e13.b1 PHD_FILE: MSMg01no081_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:26 2005CHROMAT_FILE: MSMg01no081_e13.g1 PHD_FILE: MSMg01no081_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAGTATACCACAGAGCCCAAAAGGCAGAGGAGAAGTGTTCATGGGTGC
ACTAGCCAGTTACCTCTGGAAGAGCAGCTGCATGGATTCAGGATGCACTT
CATGCACACTGGGTGCCATGCTGGATGGCTGTGGAAAGTCATCTCTTACT
AAGTCCTAATCAAAATGCTTCTAGAGAACTCCACACTGAGTCAGGGCTTT
CTGTTCCCAAGCAAACCACAGCACTGATCTCCATCTGTTTTTCTCTGACT
CTTAAGACATCCTTCCAAATTGAAAAACAAAGCACAAAATCATCTTAATT
GCCTTGCCAAAGGATTGGAAAGGAGCACCACTTTTTGTTCAGAAGACAAC
TTCAGAAAACAAAAGAGAAGCCTCAAACGGGCCAAAAGCCACAAAATGAA
AAACAAAAGAAAAACAAGGCTGGCTGTCTACTGCCAGCAGGCGTTCACCA
GGGAGAGGAGCTCTGACTCCAAAATAGTCACTTTAACATTTTGTCAATGA
TGGCAAAAGGCCATGGGTGCTGGCTAAAGGAAGGAAAGGATGTTCCAGGA
AGAAAACAGGTCTCTTTGTTGCAAGAACTGCATTCTCACTTGTATCCAAT
GCTGATAACTGGCAGCAGATACTCTGCGTAGTTCACATATTATGTGGTGA
CAC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGACACCATGGATGCAGTATGGCAGTGATTAC
ATCATCAAGTATGTGTCCATGGGGTAAGTGACATTATCCACACACAAAAG
ATCATCATTGCCTTGTATACCCCCTAGGTGGCTATGGCTTTACTATGTAG
CCCTGGCTGCCTGGAACTTACAGAGATCCATCTCTGGCTGTGAATTCTAG
GTCTGCAGCAGGGGACAGAACACCTGAATAAGGAAGATGGTCTCAAGAGT
CACTACTTGCAAATCAATTTTTATTCACAAGAAATAGAATTTTTAAAAAA
TAGGTTTTAAAAGTTCAATTAATATAGATAAAGGCAAAAACAAACAATGA
AATACAAGAACAAGAACATATAACTTCTAAATAACATAACAATAACTCAA
AGAACAAAAATAAAAACTTAAACCAAAACTCTAAAGGAAAATTATTGTTC
AGCTGCTTTCGCTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTG
CTCCTCTTGGACACTAGGTATCAGTGCAGCCGTCTCAGTTCTCTTTTGTC
TGAAGAGAAAAGGGAACAACGCCCTGAATCAGCCATGGCTTCCTAGTAAA
GGCCTATTCACCCTAAGAAAATGAATTATATGGAAGAACATTCATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_e13.b1 MSMg01no081_e13.b1 CHROMAT_FILE:
MSMg01no081_e13.b1 PHD_FILE: MSMg01no081_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:26 2005
         (565 letters)



>mm_chr5_15184864_15185828
          Length = 965

 Score = 1085 bits (561), Expect = 0.0
 Identities = 564/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcccaaaaggcagaggagaagtgttcatgggtgcactagccagttacctctggaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gagcccaaaaggcagaggagaagtgttcatgggtgcactagccagttacctctggaagag 706

                                                                       
Query: 61  cagctgcatggattcaggatgcacttcatgcacactgggtgccatgctggatggctgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cagctgcatggattcaggatgcacttcatgcacactgggtgccatgctggatggctgtgg 646

                                                                       
Query: 121 aaagtcatctcttactaagtcctaatcaaaatgcttctagagaactccacactgagtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaagtcatctcttactaagtcctaatcaaaatgcttctagagaactccacactgagtcag 586

                                                                       
Query: 181 ggctttctgttcccaagcaaaccacagcactgatctccatctgtttttctctgactctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggctttctgttcccaagcaaaccacagcactgatctccatctgtttttctctgactctta 526

                                                                       
Query: 241 agacatccttccaaattgaaaaacaaagcacaaaatcatcttaattgccttgccaaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agacatccttccaaattgaaaaacaaagcacaaaatcatcttaattgccttgccaaagga 466

                                                                       
Query: 301 ttggaaaggagcaccactttttgttcagaagacaacttcagaaaacaaaagagaagcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttggaaaggagcaccactttttgttcagaagacaacttcagaaaacaaaagagaagcctc 406

                                                                       
Query: 361 aaacgggccaaaagccacaaaatgaaaaacaaaagaaaaacaaggctggctgtctactgc 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaaggctggctgtctactgc 346

                                                                       
Query: 421 cagcaggcgttcaccagggagaggagctctgactccaaaatagtcactttaacattttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagcaggcgttcaccagggagaggagctctgactccaaaatagtcactttaacattttgt 286

                                                                       
Query: 481 caatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatgttccaggaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 caatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatgttccaggaagaa 226

                                    
Query: 541 aacaggtctctttgttgcaagaact 565
           |||||||||||||||||||||||||
Sbjct: 225 aacaggtctctttgttgcaagaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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