Query= MSMg01no081_j21.b1 MSMg01no081_j21.b1 CHROMAT_FILE:
MSMg01no081_j21.b1 PHD_FILE: MSMg01no081_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:53 2005
(315 letters)
>mm_chr5_40734602_40735316
Length = 715
Score = 429 bits (222), Expect = e-125
Identities = 271/296 (91%), Gaps = 18/296 (6%)
Strand = Plus / Plus
Query: 6 gaattcacagatagtcc-tgtttggagcttttagagagttaaacttgtgctaacttggag 64
|||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 gaattcacagatag-ccatgtttggagcttttagagagttaaatttgtgctaacttggag 264
Query: 65 aagttatttatagtaatgagctcttcactgtccttggataaattcataatttttaacata 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagttatttatagtaatgagttcttcactgtccttggataaattcataatttttaacata 324
Query: 125 gttgtcaaaagctatcttaaaaatacaacactatacatatggcacct--gatttcagttc 182
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct: 325 gttgtcaaaagctatcttaaaagtacaacactatacatatggcacctagg--ttcagttc 382
Query: 183 ttgggacacacatggtagaaggggagaattgaatatcaacacttaattttggacttcata 242
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 383 ttgggacacacatggtagaaggagagaactgaatatcaacacttaattttggacttcata 442
Query: 243 catggtctgtagcatatgctcatgcatacataaacacacacacacacacgcacaca 298
||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct: 443 cat------------atgctcatgcatacataaacacacacacacaaacacacaca 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_j21.g1 MSMg01no081_j21.g1 CHROMAT_FILE:
MSMg01no081_j21.g1 PHD_FILE: MSMg01no081_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:53 2005
(436 letters)
>mm_chr5_40860140_40860977
Length = 838
Score = 739 bits (382), Expect = 0.0
Identities = 424/438 (96%), Gaps = 2/438 (0%)
Strand = Plus / Minus
Query: 1 gaaatagcagattatggtctctatctgagatgac-tacacataacatttttgggatgctg 59
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 449 gaaatatcagattatggtctctatctgagatgacatacacataacatttttgggatgctg 390
Query: 60 ttgtaacatttgaggtctcatagttctcaggtcacctaaatcag-aaaaaaaaatcacat 118
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 389 ttgtaacatttgaggtctcatagttctcaggtcacctaaatcagaaaaaaaaaatcacat 330
Query: 119 ttatggagggtttccatagagctaggggatttcatagaaacacattcaaggctgtgataa 178
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttatggagggcttccatagagctaggggatttcatagaaacacattcaaggctgtgataa 270
Query: 179 tcgttctggttttcctatttatattcttatgctgtatgttatggtatcttccccatacct 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 tcgttctggttttcctatttatattcgtatgctgtatgttatggtatcttccccatacct 210
Query: 239 cttttctcattcttccctccctcccttctttcctcccttacttgtattcttcatctcttc 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cttttctcattctcccctccctcccttctttcctcccttacttgtattcttcatctcttc 150
Query: 299 ctttctcccccttctctttgttccttcttctctcccttcctttgttccttttctcggtct 358
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 149 ctttcttccccttctccttgttccttcttctctctcttcctttgttccttttctctgtct 90
Query: 359 ttcatctttctttttcccctttcctttcatctcctagcagcagaaagttttatcacagcc 418
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 89 ttaatctttctttttcccctttcctttcatctcctagcagcagaatgttttatcacagtc 30
Query: 419 ttatttaaaaaggagtca 436
||| ||||||||||||||
Sbjct: 29 ttacttaaaaaggagtca 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 838
Length adjustment: 9
Effective length of query: 427
Effective length of database: 829
Effective search space: 353983
Effective search space used: 353983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
