Query= MSMg01no082_a21.b1 MSMg01no082_a21.b1 CHROMAT_FILE:
MSMg01no082_a21.b1 PHD_FILE: MSMg01no082_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:27 2005
(286 letters)
>mm_chr5_40734628_40735314
Length = 687
Score = 393 bits (203), Expect = e-114
Identities = 250/273 (91%), Gaps = 15/273 (5%)
Strand = Plus / Plus
Query: 1 tggagcttttagagag-taaacttgtgctaacttggagaagttatttatagcaatgagct 59
|||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
Sbjct: 201 tggagcttttagagagttaaatttgtgctaacttggagaagttatttatagtaatgagtt 260
Query: 60 cttcactgtccttggataaattcataatttttaacatagttgtcaaaagctatcttaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcactgtccttggataaattcataatttttaacatagttgtcaaaagctatcttaaaa 320
Query: 120 atacaacactatacatatggcacctgag-ttcagttcttgggacacacatggtagaaggg 178
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 321 gtacaacactatacatatggcacct-aggttcagttcttgggacacacatggtagaagga 379
Query: 179 gagaattgaatatcaacacttaattttggacttcatacatgggctgtagcatatgctcat 238
||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 gagaactgaatatcaacacttaattttggacttcatacat------------atgctcat 427
Query: 239 gcatacataaacacacacacacacacgcacaca 271
||||||||||||||||||||||| || ||||||
Sbjct: 428 gcatacataaacacacacacacaaacacacaca 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no082_a21.g1 MSMg01no082_a21.g1 CHROMAT_FILE:
MSMg01no082_a21.g1 PHD_FILE: MSMg01no082_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:27 2005
(441 letters)
>mm_chr5_40860140_40860981
Length = 842
Score = 750 bits (388), Expect = 0.0
Identities = 427/440 (97%), Gaps = 3/440 (0%)
Strand = Plus / Minus
Query: 1 tttctacgatagtaagtaatgtgaaatagcagattatggtctctatctgagatgac-tac 59
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 470 tttctacgatag-aagtaatgtgaaatatcagattatggtctctatctgagatgacatac 412
Query: 60 acataacatttttgggatgctgttgtaacatttgaggtctcatagttctcaggtcaccta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acataacatttttgggatgctgttgtaacatttgaggtctcatagttctcaggtcaccta 352
Query: 120 aatcag-aaaaaaaaatcacatttatggagggtttccatagagctaggggatttcataga 178
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 351 aatcagaaaaaaaaaatcacatttatggagggcttccatagagctaggggatttcataga 292
Query: 179 aacacattcaaggctgtgataatcgttctggttttcctatttatattcttatgctgtatg 238
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 291 aacacattcaaggctgtgataatcgttctggttttcctatttatattcgtatgctgtatg 232
Query: 239 ttatggtatcttccccatacctcttttctcattcttccctccctcccttctttcctccct 298
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 231 ttatggtatcttccccatacctcttttctcattctcccctccctcccttctttcctccct 172
Query: 299 tacttgtattcttcatctcttcctttctcccccttctctttgttccttcttctctccctt 358
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct: 171 tacttgtattcttcatctcttcctttcttccccttctccttgttccttcttctctctctt 112
Query: 359 cctttgttccttttctcggtctttcatctttctttttcccctttcctttcatctcctagc 418
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 111 cctttgttccttttctctgtctttaatctttctttttcccctttcctttcatctcctagc 52
Query: 419 agcagaaagttttatcacag 438
||||||| ||||||||||||
Sbjct: 51 agcagaatgttttatcacag 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space: 359856
Effective search space used: 359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
